Crystal structures of human NSDHL and development of its novel inhibitor with the potential to suppress EGFR activity

Cell Mol Life Sci. 2021 Jan;78(1):207-225. doi: 10.1007/s00018-020-03490-2. Epub 2020 Mar 5.

Abstract

NAD(P)-dependent steroid dehydrogenase-like (NSDHL), an essential enzyme in human cholesterol synthesis and a regulator of epidermal growth factor receptor (EGFR) trafficking pathways, has attracted interest as a therapeutic target due to its crucial relevance to cholesterol-related diseases and carcinomas. However, the development of pharmacological agents for targeting NSDHL has been hindered by the absence of the atomic details of NSDHL. In this study, we reported two X-ray crystal structures of human NSDHL, which revealed a detailed description of the coenzyme-binding site and the unique conformational change upon the binding of a coenzyme. A structure-based virtual screening and biochemical evaluation were performed and identified a novel inhibitor for NSDHL harboring suppressive activity towards EGFR. In EGFR-driven human cancer cells, treatment with the potent NSDHL inhibitor enhanced the antitumor effect of an EGFR kinase inhibitor. Overall, these findings could serve as good platforms for the development of therapeutic agents against NSDHL-related diseases.

Keywords: Cholesterol synthesis pathway; EGFR; Membrane-anchored protein; NSDHL; Structure-based drug design.

MeSH terms

  • 3-Hydroxysteroid Dehydrogenases / antagonists & inhibitors
  • 3-Hydroxysteroid Dehydrogenases / chemistry
  • 3-Hydroxysteroid Dehydrogenases / genetics
  • 3-Hydroxysteroid Dehydrogenases / metabolism*
  • Binding Sites
  • Cell Line, Tumor
  • Cell Survival / drug effects
  • Cholesterol / chemistry
  • Crystallography, X-Ray
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / metabolism*
  • Enzyme Inhibitors / pharmacology
  • ErbB Receptors / antagonists & inhibitors
  • ErbB Receptors / metabolism
  • Erlotinib Hydrochloride / chemistry
  • Erlotinib Hydrochloride / metabolism
  • Erlotinib Hydrochloride / pharmacology
  • Humans
  • Kinetics
  • Molecular Docking Simulation
  • Mutagenesis, Site-Directed
  • NAD / chemistry
  • NAD / metabolism
  • Protein Structure, Tertiary
  • Recombinant Proteins / biosynthesis
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / isolation & purification
  • Signal Transduction

Substances

  • Enzyme Inhibitors
  • Recombinant Proteins
  • NAD
  • Cholesterol
  • Erlotinib Hydrochloride
  • 3-Hydroxysteroid Dehydrogenases
  • Nsdhl protein, human
  • EGFR protein, human
  • ErbB Receptors