The RNA-binding protein QKI-7 recruits the poly(A) polymerase GLD-2 for 3' adenylation and selective stabilization of microRNA-122

J Biol Chem. 2020 Jan 10;295(2):390-402. doi: 10.1074/jbc.RA119.011617. Epub 2019 Dec 1.

Abstract

MicroRNA-122 (miR-122) is highly expressed in hepatocytes, where it plays an important role in regulating cholesterol and fatty acid metabolism, and it is also a host factor required for hepatitis C virus replication. miR-122 is selectively stabilized by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2 (also known as PAPD4 or TENT2). However, it is unclear how GLD-2 specifically stabilizes miR-122. Here, we show that QKI7 KH domain-containing RNA binding (QKI-7), one of three isoforms of the QKI proteins, which are members of the signal transduction and activation of RNA (STAR) family of RNA-binding proteins, is involved in miR-122 stabilization. QKI down-regulation specifically decreased the steady-state level of mature miR-122, but did not affect the pre-miR-122 level. We also found that QKI-7 uses its C-terminal region to interact with GLD-2 and its QUA2 domain to associate with the RNA-induced silencing complex protein Argonaute 2 (Ago2), indicating that the GLD-2-QKI-7 interaction recruits GLD-2 to Ago2. QKI-7 exhibited specific affinity to miR-122 and significantly promoted GLD-2-mediated 3' adenylation of miR-122 in vitro Taken together, our findings indicate that miR-122 binds Ago2-interacting QKI-7, which recruits GLD-2 for 3' adenylation and stabilization of miR-122.

Keywords: RNA binding protein; hepatocyte; miRNA metabolism; microRNA (miRNA); polyadenylation; post-transcriptional regulation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Argonaute Proteins / metabolism
  • Cell Line, Tumor
  • Humans
  • MicroRNAs / metabolism*
  • Polyadenylation
  • Polynucleotide Adenylyltransferase / metabolism*
  • Protein Interaction Maps
  • RNA Stability
  • RNA-Binding Proteins / metabolism*
  • mRNA Cleavage and Polyadenylation Factors / metabolism*

Substances

  • AGO2 protein, human
  • Argonaute Proteins
  • MIRN122 microRNA, human
  • MicroRNAs
  • QKI protein, human
  • RNA-Binding Proteins
  • mRNA Cleavage and Polyadenylation Factors
  • Polynucleotide Adenylyltransferase
  • TENT2 protein, human