Neto proteins regulate gating of the kainate-type glutamate receptor GluK2 through two binding sites

J Biol Chem. 2019 Nov 22;294(47):17889-17902. doi: 10.1074/jbc.RA119.008631. Epub 2019 Oct 18.

Abstract

The neuropilin and tolloid-like (Neto) proteins Neto1 and Neto2 are auxiliary subunits of kainate-type glutamate receptors (KARs) that regulate KAR trafficking and gating. However, how Netos bind and regulate the biophysical functions of KARs remains unclear. Here, we found that the N-terminal domain (NTD) of glutamate receptor ionotropic kainate 2 (GluK2) binds the first complement C1r/C1s-Uegf-BMP (CUB) domain of Neto proteins (i.e. NTD-CUB1 interaction) and that the core of GluK2 (GluK2ΔNTD) binds Netos through domains other than CUB1s (core-Neto interaction). Using electrophysiological analysis in HEK293T cells, we examined the effects of these interactions on GluK2 gating, including deactivation, desensitization, and recovery from desensitization. We found that NTD deletion does not affect GluK2 fast gating kinetics, the desensitization, and the deactivation. We also observed that Neto1 and Neto2 differentially regulate GluK2 fast gating kinetics, which largely rely on the NTD-CUB1 interactions. NTD removal facilitated GluK2 recovery from desensitization, indicating that the NTD stabilizes the GluK2 desensitization state. Co-expression with Neto1 or Neto2 also accelerated GluK2 recovery from desensitization, which fully relied on the NTD-CUB1 interactions. Moreover, we demonstrate that the NTD-CUB1 interaction involves electric attraction between positively charged residues in the GluK2_NTD and negatively charged ones in the CUB1 domains. Neutralization of these charges eliminated the regulatory effects of the NTD-CUB1 interaction on GluK2 gating. We conclude that KARs bind Netos through at least two sites and that the NTD-CUB1 interaction critically regulates Neto-mediated GluK2 gating.

Keywords: CUB domain; N-terminal domain (NTD); allosteric regulation; channel gating; deactivation; desensitization; gating; glutamate ionotropic receptor kainate type subunit 2 (GriK2); glutamate receptor ionotropic kainate 2 (GluK2); ionotropic glutamate receptor; kainate receptor; neuropilin and tolloid-like (Neto); protein-protein interaction; receptor desensitization; recovery from desensitization.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • GluK2 Kainate Receptor
  • HEK293 Cells
  • Humans
  • Ion Channel Gating*
  • Membrane Proteins / chemistry
  • Membrane Proteins / metabolism*
  • Mice
  • Models, Biological
  • Models, Molecular
  • Protein Binding
  • Protein Domains
  • Rats
  • Receptors, Kainic Acid / chemistry
  • Receptors, Kainic Acid / metabolism*
  • Receptors, N-Methyl-D-Aspartate / chemistry
  • Receptors, N-Methyl-D-Aspartate / metabolism*
  • Sequence Deletion

Substances

  • Membrane Proteins
  • Neto1 protein, mouse
  • Neto2 protein, rat
  • Receptors, Kainic Acid
  • Receptors, N-Methyl-D-Aspartate

Associated data

  • PDB/5KUF
  • PDB/3KQ4