Pyridoxal 5'-phosphate mediated inactivation of Escherichia coli DNA polymerase I: identification of lysine-635 as an essential residue for the processive mode of DNA synthesis

Biochemistry. 1988 Sep 6;27(18):6710-6. doi: 10.1021/bi00418a011.

Abstract

Inactivation of Escherichia coli DNA polymerase I by pyridoxal 5'-phosphate treatment results from its reactivity at multiple lysine residues. One of these residues, lysine-758, has been shown to be located at the substrate binding site in DNA polymerase I [Basu, A., & Modak, M. J. (1987) Biochemistry 26, 1704-1709]. We now demonstrate that lysine-635 is another important target of pyridoxylation; modification of this site results in decreased rates of DNA synthesis. Addition of template-primer with or without substrate deoxynucleoside triphosphate protects lysine-635 from pyridoxylation. Analysis of the initiation versus elongation phase of DNA synthesis by lysine-635-modified enzyme revealed that elongation of the DNA chain is severely affected by the lysine-635 modification. We therefore conclude that this lysine residue plays an important role in the processive mode of DNA synthesis by E. coli DNA polymerase I.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Binding Sites
  • DNA Polymerase I / antagonists & inhibitors*
  • DNA Polymerase I / metabolism
  • DNA Polymerase I / radiation effects
  • DNA, Bacterial / biosynthesis*
  • Escherichia coli / metabolism*
  • Kinetics
  • Lysine
  • Peptide Fragments / isolation & purification
  • Pyridoxal Phosphate / pharmacology*
  • Trypsin
  • Ultraviolet Rays

Substances

  • DNA, Bacterial
  • Peptide Fragments
  • Pyridoxal Phosphate
  • DNA Polymerase I
  • Trypsin
  • Lysine