Crystal structure of the SPRY domain of human SPSB2 in the apo state

Acta Crystallogr F Struct Biol Commun. 2019 Jun 1;75(Pt 6):412-418. doi: 10.1107/S2053230X1900623X. Epub 2019 May 10.

Abstract

The SPRY domain-containing SOCS box protein 2 (SPSB2) is one of four mammalian SPSB proteins that are characterized by a C-terminal SOCS box and a central SPRY/B30.2 domain. SPSB2 interacts with inducible nitric oxide synthase (iNOS) via the SPRY domain and polyubiquitinates iNOS, resulting in its proteasomal degradation. Inhibitors that can disrupt SPSB2-iNOS interaction and augment NO production may serve as novel anti-infective and anticancer agents. The previously determined murine SPSB2 structure may not reflect the true apo conformation of the iNOS-binding site. Here, the crystal structure of human SPSB2 SPRY domain in the apo state is reported at a resolution of 1.9 Å. Comparison of the apo and ligand-bound structures reveals that the iNOS-binding site is highly preformed and that major conformational changes do not occur upon ligand binding. Moreover, the C-terminal His6 tag of the recombinant protein binds to a shallow pocket adjacent to the iNOS-binding site on a crystallographically related SPSB2 molecule. These findings may help in structure-based and fragment-based SPSB2 inhibitor design in the future.

Keywords: His6 tag; SPRY domain of SPRY domain-containing human SOCS box protein 2; SPRY/B30.2 domain; SPSB2; apo structure; iNOS.

MeSH terms

  • Amino Acid Sequence
  • Apoproteins / chemistry*
  • Apoproteins / metabolism*
  • B30.2-SPRY Domain
  • Crystallography, X-Ray
  • Humans
  • Models, Molecular*
  • Nitric Oxide Synthase Type II / chemistry
  • Nitric Oxide Synthase Type II / metabolism*
  • Protein Conformation
  • Suppressor of Cytokine Signaling Proteins / chemistry*
  • Suppressor of Cytokine Signaling Proteins / metabolism*

Substances

  • Apoproteins
  • SPSB2 protein, human
  • Suppressor of Cytokine Signaling Proteins
  • NOS2 protein, human
  • Nitric Oxide Synthase Type II