Cytosine methylation by DNMT2 facilitates stability and survival of HIV-1 RNA in the host cell during infection

Biochem J. 2017 Jun 6;474(12):2009-2026. doi: 10.1042/BCJ20170258.

Abstract

The enigmatic methyltransferase, DNMT2 (DNA methyltransferase 2), structurally resembles a DNA methyltransferase, but has been shown to be a tRNA methyltransferase targeting cytosine within a specific CpG in different tRNA molecules. We had previously shown that, during environmental stress conditions, DNMT2 is re-localized from the nucleus to the cytoplasmic stress granules (SGs) and is associated with RNA-processing proteins. In the present study, we show that DNMT2 binds and methylates various mRNA species in a sequence-independent manner and gets re-localized to SGs in a phosphorylation-dependent manner. Importantly, our results indicate that HIV-1 enhances its survivability in the host cell by utilizing this RNA methylation capability of DNMT2 to increase the stability of its own genome. Upon infection, DNMT2 re-localizes from the nucleus to the SGs and methylates HIV-1 RNA. This DNMT2-dependent methylation provided post-transcriptional stability to the HIV-1 RNA. Furthermore, DNMT2 overexpression increased the HIV-1 viral titre. This would suggest that HIV hijacks the RNA-processing machinery within the SGs to ensure its own survival in the host cell. Thus, our findings provide for a novel mechanism by which virus tries to modulate the host cell machinery to its own advantage.

Keywords: DNMT2; RNA methylation; TRDMT1; methyltransferases.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cytoplasmic Granules / enzymology
  • Cytoplasmic Granules / virology
  • Cytosine / metabolism*
  • DNA (Cytosine-5-)-Methyltransferases / antagonists & inhibitors
  • DNA (Cytosine-5-)-Methyltransferases / chemistry
  • DNA (Cytosine-5-)-Methyltransferases / genetics
  • DNA (Cytosine-5-)-Methyltransferases / metabolism*
  • HEK293 Cells
  • HIV-1 / growth & development
  • HIV-1 / physiology*
  • Host-Pathogen Interactions*
  • Humans
  • Methylation
  • Microbial Viability
  • Phosphorylation
  • Protein Processing, Post-Translational
  • Protein Transport
  • RNA Interference
  • RNA Processing, Post-Transcriptional*
  • RNA Stability
  • RNA, Messenger / metabolism*
  • RNA, Viral / metabolism*
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / metabolism
  • Substrate Specificity
  • Up-Regulation
  • Virus Replication

Substances

  • RNA, Messenger
  • RNA, Viral
  • Recombinant Fusion Proteins
  • Cytosine
  • DNA (Cytosine-5-)-Methyltransferases
  • TRDMT1 protein, human