Investigation of correlations between DNA methylation, suicidal behavior and aging

Bipolar Disord. 2017 Feb;19(1):32-40. doi: 10.1111/bdi.12466. Epub 2017 Mar 9.

Abstract

Objectives: Suicidal behavior (SB) is a major cause of mortality for patients diagnosed with bipolar disorder (BD). In this study, we investigated epigenetic differences in BD participants with and without a history of SB.

Methods: We used suicidality scores constructed from Schedule for Clinical Assessments in Neuropsychiatry (SCAN) interview questions about suicidal thought and behavior to identify individuals from a BD cohort of n=452; participants with the most extreme high (H-SB, n=18) and most extreme low (L-SB, n=22) scores were used as cases and controls, respectively. Epigenome-wide DNA methylation patterns were compared between the two groups using the Illumina Infinium Human Methylation 450 BeadChip microarray. DNA methylation age was compared to chronological tissue age.

Results: We observed highly significant differences in methylation between cases and controls in three genomic regions enriched for epigenetic modifications corresponding to gene regulatory regions. BD participants with a history of SB showed less overall methylation in the 5' untranslated region of Membrane palmitoylated protein 4 (MPP4) (P=7.42×10-7 ) and in intron 3 of TRE2/BUB2/CDC16 domain family member 16 (TBC1D16) (P=6.47×10-7 ), while exon 1 of Nucleoporin 133 (NUP133) was less methylated in controls (P=1.17x10-6 ). Moreover, we observed a greater correlation between DNA methylation age and tissue age in controls (r=.91, P<.0001) than in the H-SB group (r=.83, P<.0001).

Conclusions: We report significant findings at three loci based on a methylome scan of participants with BD for an SB phenotype, and potentially altered molecular aging in suicide attempters. Despite the small sample size, our proof-of-concept study highlights the potential for epigenetic factors to be useful in understanding the molecular underpinnings of suicide with the ultimate aim of its prevention.

Keywords: 450K; DNA methylation; aging; bipolar disorder; suicide.

MeSH terms

  • Adult
  • Aging / genetics*
  • Bipolar Disorder* / complications
  • Bipolar Disorder* / genetics
  • Bipolar Disorder* / psychology
  • DNA Methylation / genetics
  • Epigenesis, Genetic
  • Eye Proteins / genetics*
  • Female
  • GTPase-Activating Proteins / genetics*
  • Humans
  • Male
  • Membrane Proteins / genetics*
  • Middle Aged
  • Minor Histocompatibility Antigens / genetics*
  • Nuclear Pore Complex Proteins / genetics*
  • Nucleoside-Phosphate Kinase / genetics*
  • Risk Assessment / methods
  • Suicidal Ideation*
  • Suicide Prevention*
  • Suicide* / psychology

Substances

  • Eye Proteins
  • GTPase-Activating Proteins
  • Membrane Proteins
  • Minor Histocompatibility Antigens
  • NUP133 protein, human
  • Nuclear Pore Complex Proteins
  • TBC1D16 protein, human
  • Nucleoside-Phosphate Kinase
  • MPP4 protein, human