A potential prognostic lncRNA signature for predicting survival in patients with bladder urothelial carcinoma

Oncotarget. 2017 Feb 7;8(6):10485-10497. doi: 10.18632/oncotarget.14441.

Abstract

Increasing evidence has highlighted the critical roles of long non-coding RNA (lncRNA) in cancer development and progression. However, the prognostic power of expression-based lncRNA signature for predicting overall survival in patients with Bladder Urothelial Carcinoma (BLCA) has not been investigated. Here, we performed a comprehensive analysis for lncRNA expression profiles and corresponding clinical information of 234 BLCA patients from The Cancer Genome Atlas (TCGA). We established a set of four-lncRNAs that were significantly associated with BLCA patients' survival. Using the prognostic four-lncRNA signature, we successfully classified the BLCA patients into high-risk and low-risk groups, and the prognostic power of the four-lncRNA signature was further validated in the testing dataset and entire dataset. Multivariate Cox regression and stratified analyses demonstrated that the prognostic power of the four-lncRNA signature was independent of other clinical variables. Functional enrichment analyses suggested the four prognostic lncRNAs may be involved in known BLCA-related biological processes and pathways. Our results demonstrated that the four-lncRNA signature could be novel independent biomarkers for predicting survival in patients with BLCA.

Keywords: bladder urothelial carcinoma; long non-coding RNA; prognosis.

Publication types

  • Validation Study

MeSH terms

  • Aged
  • Area Under Curve
  • Biomarkers, Tumor / genetics*
  • Carcinoma / genetics*
  • Carcinoma / mortality
  • Carcinoma / pathology
  • Carcinoma / therapy
  • Computational Biology
  • Databases, Genetic
  • Female
  • Gene Expression Profiling
  • Genetic Predisposition to Disease
  • Humans
  • Kaplan-Meier Estimate
  • Male
  • Middle Aged
  • Multivariate Analysis
  • Phenotype
  • Predictive Value of Tests
  • Prognosis
  • Proportional Hazards Models
  • RNA, Long Noncoding / genetics*
  • ROC Curve
  • Reproducibility of Results
  • Risk Factors
  • Time Factors
  • Transcriptome*
  • Urinary Bladder Neoplasms / genetics*
  • Urinary Bladder Neoplasms / mortality
  • Urinary Bladder Neoplasms / pathology
  • Urinary Bladder Neoplasms / therapy
  • Urothelium* / pathology

Substances

  • Biomarkers, Tumor
  • RNA, Long Noncoding