The tumor suppressor inhibitor of growth 4 binds double-stranded DNA through its disordered central region

FEBS Lett. 2017 Jan;591(2):425-432. doi: 10.1002/1873-3468.12514. Epub 2016 Dec 22.

Abstract

The tumor suppressor inhibitor of growth 4 (ING4) regulates chromatin structure by recruiting the histone acetyl transferase complex HBO1 to sites with histone H3 trimethylated at K4. ING4 dimerizes through its N-terminal domain and recognizes H3K4me3 by the C-terminal plant homeodomain (PHD). The central region of ING4 is disordered and contains the nuclear localization signal. Here, utilizing electrophoresis and nuclear magnetic resonance, we show that ING4 binds double-stranded DNA through its central region with micromolar affinity. Our findings suggest that the cooperativity arising from the presence of two DNA-binding regions in the ING4 dimer, as well as two H3K4me3-binding PHD fingers, may strengthen nucleosome binding and HBO1 complex recruitment.

Keywords: DNA binding; chromatin remodeling; electrophoretic mobility shift assay; inhibitor of growth 4; nuclear magnetic resonance; tumor suppressor.

Publication types

  • Letter
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Biophysical Phenomena
  • Cell Cycle Proteins / chemistry
  • Cell Cycle Proteins / metabolism*
  • DNA / chemistry*
  • DNA / metabolism*
  • Electrophoretic Mobility Shift Assay
  • Fluorescence
  • Homeodomain Proteins / chemistry
  • Homeodomain Proteins / metabolism*
  • Humans
  • Magnetic Resonance Spectroscopy
  • Mutant Proteins / metabolism
  • Protein Binding
  • Protein Domains
  • Protein Multimerization
  • Titrimetry
  • Tumor Suppressor Proteins / chemistry
  • Tumor Suppressor Proteins / metabolism*

Substances

  • Cell Cycle Proteins
  • Homeodomain Proteins
  • ING4 protein, human
  • Mutant Proteins
  • Tumor Suppressor Proteins
  • DNA