Leukocyte integrin αLβ2 headpiece structures: The αI domain, the pocket for the internal ligand, and concerted movements of its loops

Proc Natl Acad Sci U S A. 2016 Mar 15;113(11):2940-5. doi: 10.1073/pnas.1601379113. Epub 2016 Mar 2.

Abstract

High-resolution crystal structures of the headpiece of lymphocyte function-associated antigen-1 (integrin αLβ2) reveal how the αI domain interacts with its platform formed by the α-subunit β-propeller and β-subunit βI domains. The αLβ2 structures compared with αXβ2 structures show that the αI domain, tethered through its N-linker and a disulfide to a stable β-ribbon pillar near the center of the platform, can undergo remarkable pivoting and tilting motions that appear buffered by N-glycan decorations that differ between αL and αX subunits. Rerefined β2 integrin structures reveal details including pyroglutamic acid at the β2 N terminus and bending within the EGF1 domain. Allostery is relayed to the αI domain by an internal ligand that binds to a pocket at the interface between the β-propeller and βI domains. Marked differences between the αL and αX subunit β-propeller domains concentrate near the binding pocket and αI domain interfaces. Remarkably, movement in allostery in the βI domain of specificity determining loop 1 (SDL1) causes concerted movement of SDL2 and thereby tightens the binding pocket for the internal ligand.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Allosteric Regulation
  • Allosteric Site
  • Amino Acid Motifs
  • Amino Acid Sequence
  • Binding Sites
  • Consensus Sequence
  • Crystallography, X-Ray
  • Humans
  • Leukocytes / chemistry
  • Ligands
  • Lymphocyte Function-Associated Antigen-1 / chemistry*
  • Models, Molecular
  • Molecular Sequence Data
  • Motion
  • Protein Binding
  • Protein Conformation
  • Protein Structure, Tertiary
  • Sequence Alignment
  • Sequence Homology, Amino Acid

Substances

  • Ligands
  • Lymphocyte Function-Associated Antigen-1

Associated data

  • PDB/5E6R
  • PDB/5E6S
  • PDB/5E6U
  • PDB/5E6X
  • PDB/5ES4