Hybrid Structural Analysis of the Arp2/3 Regulator Arpin Identifies Its Acidic Tail as a Primary Binding Epitope

Structure. 2016 Feb 2;24(2):252-60. doi: 10.1016/j.str.2015.12.001. Epub 2016 Jan 7.

Abstract

Arpin is a newly discovered regulator of actin polymerization at the cell leading edge, which steers cell migration by exerting a negative control on the Arp2/3 complex. Arpin proteins have an acidic tail homologous to the acidic motif of the VCA domain of nucleation-promoting factors (NPFs). This tail is predicted to compete with the VCA of NPFs for binding to the Arp2/3 complex, thereby mitigating activation and/or tethering of the complex to sites of actin branching. Here, we investigated the structure of full-length Arpin using synchrotron small-angle X-ray scattering, and of its acidic tail in complex with an ankyrin repeats domain using X-ray crystallography. The data were combined in a hybrid model in which the acidic tail extends from the globular core as a linear peptide and forms a primary epitope that is readily accessible in unbound Arpin and suffices to tether Arpin to interacting proteins with high affinity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actin-Related Protein 2-3 Complex / metabolism*
  • Animals
  • Binding Sites
  • Carrier Proteins / chemistry*
  • Carrier Proteins / metabolism*
  • Crystallography, X-Ray
  • Epitopes / metabolism
  • Fish Proteins / chemistry*
  • Fish Proteins / metabolism
  • Fishes / metabolism*
  • Humans
  • Models, Molecular
  • Protein Binding
  • Protein Conformation
  • Scattering, Small Angle
  • X-Ray Diffraction

Substances

  • Actin-Related Protein 2-3 Complex
  • Carrier Proteins
  • Epitopes
  • Fish Proteins
  • arpin protein, human