α/β coiled coils

Elife. 2016 Jan 15:5:e11861. doi: 10.7554/eLife.11861.

Abstract

Coiled coils are the best-understood protein fold, as their backbone structure can uniquely be described by parametric equations. This level of understanding has allowed their manipulation in unprecedented detail. They do not seem a likely source of surprises, yet we describe here the unexpected formation of a new type of fiber by the simple insertion of two or six residues into the underlying heptad repeat of a parallel, trimeric coiled coil. These insertions strain the supercoil to the breaking point, causing the local formation of short β-strands, which move the path of the chain by 120° around the trimer axis. The result is an α/β coiled coil, which retains only one backbone hydrogen bond per repeat unit from the parent coiled coil. Our results show that a substantially novel backbone structure is possible within the allowed regions of the Ramachandran space with only minor mutations to a known fold.

Keywords: biophysics; fiber; heptad repeat; none; sequence periodicity; structural biology; supercoil; α-helix.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Crystallography, X-Ray
  • Gram-Positive Bacteria / chemistry
  • Gram-Positive Bacteria / genetics
  • Hydrogen Bonding
  • Models, Molecular
  • Protein Structure, Secondary
  • Protein Structure, Tertiary

Substances

  • Bacterial Proteins

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.