SWI/SNF Subunits SMARCA4, SMARCD2 and DPF2 Collaborate in MLL-Rearranged Leukaemia Maintenance

PLoS One. 2015 Nov 16;10(11):e0142806. doi: 10.1371/journal.pone.0142806. eCollection 2015.

Abstract

Alterations in chromatin structure caused by deregulated epigenetic mechanisms collaborate with underlying genetic lesions to promote cancer. SMARCA4/BRG1, a core component of the SWI/SNF ATP-dependent chromatin-remodelling complex, has been implicated by its mutational spectrum as exerting a tumour-suppressor function in many solid tumours; recently however, it has been reported to sustain leukaemogenic transformation in MLL-rearranged leukaemia in mice. Here we further explore the role of SMARCA4 and the two SWI/SNF subunits SMARCD2/BAF60B and DPF2/BAF45D in leukaemia. We observed the selective requirement for these proteins for leukaemic cell expansion and self-renewal in-vitro as well as in leukaemia. Gene expression profiling in human cells of each of these three factors suggests that they have overlapping functions in leukaemia. The gene expression changes induced by loss of the three proteins demonstrate that they are required for the expression of haematopoietic stem cell associated genes but in contrast to previous results obtained in mouse cells, the three proteins are not required for the expression of c-MYC regulated genes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Cycle
  • Cell Differentiation
  • Cell Line, Tumor
  • Cell Proliferation
  • Cell Self Renewal
  • Chromosomal Proteins, Non-Histone / metabolism*
  • DNA Helicases / metabolism*
  • DNA-Binding Proteins / metabolism*
  • Gene Expression Regulation, Leukemic
  • Gene Knockdown Techniques
  • Gene Rearrangement
  • Leukemia / genetics
  • Leukemia / pathology*
  • Mice
  • Muscle Proteins / metabolism*
  • Myeloid Cells / pathology
  • Myeloid-Lymphoid Leukemia Protein / genetics*
  • Nuclear Proteins / metabolism*
  • Protein Subunits / metabolism
  • Proto-Oncogene Proteins c-myc / genetics
  • Repressor Proteins / metabolism*
  • Transcription Factors / metabolism*
  • Transcription, Genetic

Substances

  • Chromosomal Proteins, Non-Histone
  • DNA-Binding Proteins
  • DPF2 protein, human
  • DPF2 protein, mouse
  • Muscle Proteins
  • Nuclear Proteins
  • Protein Subunits
  • Proto-Oncogene Proteins c-myc
  • Repressor Proteins
  • SMARCD2 protein, human
  • SWI-SNF-B chromatin-remodeling complex
  • Smarcd2 protein, mouse
  • Transcription Factors
  • Myeloid-Lymphoid Leukemia Protein
  • SMARCA4 protein, human
  • Smarca4 protein, mouse
  • DNA Helicases

Grants and funding

PS was funded by fellowships from: Danish Medical Research Council Fellowship: http://ufm.dk/forskning-og-innovation/rad-og-udvalg/det-frie-forskningsrad/radet/dff-sundhed-og-sygdom; EMBO Long-Term Postdoctoral Fellowship: www.embo.org; Marie Curie Intra-European Fellowship: ec.europa.eu. The research was supported by grants to KH from: The Danish National Research Foundation (DNRF82): www.dg.dk; the European Union grant BLUEPRINT (FP7/2011; 282510): ec.europa.eu/; The Lundbeck Foundation: www.lundbeckfonden.com; The Novo Nordisk Foundation: www.novonordiskfonden.dk; The Danish Council for Strategic Research (12-110503): innovationsfonden.dk. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.