GREM1 and POLE variants in hereditary colorectal cancer syndromes

Genes Chromosomes Cancer. 2016 Jan;55(1):95-106. doi: 10.1002/gcc.22314. Epub 2015 Oct 23.

Abstract

Hereditary factors are thought to play a role in at least one third of patients with colorectal cancer (CRC) but only a limited proportion of these have mutations in known high-penetrant genes. In a relatively large part of patients with a few or multiple colorectal polyps the underlying genetic cause of the disease is still unknown. Using exome sequencing in combination with linkage analyses together with detection of copy-number variations (CNV), we have identified a duplication in the regulatory region of the GREM1 gene in a family with an attenuated/atypical polyposis syndrome. In addition, 107 patients with colorectal cancer and/or polyposis were analyzed for mutations in the candidate genes identified. We also performed screening of the exonuclease domain of the POLE gene in a subset of these patients. The duplication of 16 kb in the regulatory region of GREM1 was found to be disease-causing in the family. Functional analyses revealed a higher expression of the GREM1 gene in colorectal tissue in duplication carriers. Screening of the exonuclease domain of POLE in additional CRC patients identified a probable causative novel variant c.1274A>G, p.Lys425Arg. In conclusion a high penetrant duplication in the regulatory region of GREM1, predisposing to CRC, was identified in a family with attenuated/atypical polyposis. A POLE variant was identified in a patient with early onset CRC and a microsatellite stable (MSS) tumor. Mutations leading to increased expression of genes can constitute disease-causing mutations in hereditary CRC syndromes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenomatous Polyposis Coli / genetics*
  • Colorectal Neoplasms / genetics*
  • DNA Polymerase II / chemistry
  • DNA Polymerase II / genetics*
  • Female
  • Gene Expression Regulation, Neoplastic
  • Genetic Linkage
  • Humans
  • Intercellular Signaling Peptides and Proteins / genetics*
  • Male
  • Pedigree
  • Poly-ADP-Ribose Binding Proteins
  • Polymorphism, Single Nucleotide*
  • Segmental Duplications, Genomic*
  • Sequence Analysis, DNA

Substances

  • GREM1 protein, human
  • Intercellular Signaling Peptides and Proteins
  • Poly-ADP-Ribose Binding Proteins
  • DNA Polymerase II
  • POLE protein, human