Cdt1-binding protein GRWD1 is a novel histone-binding protein that facilitates MCM loading through its influence on chromatin architecture

Nucleic Acids Res. 2015 Jul 13;43(12):5898-911. doi: 10.1093/nar/gkv509. Epub 2015 May 18.

Abstract

Efficient pre-replication complex (pre-RC) formation on chromatin templates is crucial for the maintenance of genome integrity. However, the regulation of chromatin dynamics during this process has remained elusive. We found that a conserved protein, GRWD1 (glutamate-rich WD40 repeat containing 1), binds to two representative replication origins specifically during G1 phase in a CDC6- and Cdt1-dependent manner, and that depletion of GRWD1 reduces loading of MCM but not CDC6 and Cdt1. Furthermore, chromatin immunoprecipitation coupled with high-throughput sequencing (Seq) revealed significant genome-wide co-localization of GRWD1 with CDC6. We found that GRWD1 has histone-binding activity. To investigate the effect of GRWD1 on chromatin architecture, we used formaldehyde-assisted isolation of regulatory elements (FAIRE)-seq or FAIRE-quantitative PCR analyses, and the results suggest that GRWD1 regulates chromatin openness at specific chromatin locations. Taken together, these findings suggest that GRWD1 may be a novel histone-binding protein that regulates chromatin dynamics and MCM loading at replication origins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carrier Proteins / analysis
  • Carrier Proteins / metabolism*
  • Carrier Proteins / physiology
  • Cell Cycle
  • Cell Cycle Proteins / metabolism
  • Cell Nucleus / chemistry
  • Chromatin / chemistry
  • Chromatin / metabolism*
  • DNA Replication
  • HEK293 Cells
  • HeLa Cells
  • Histones / metabolism*
  • Humans
  • Lamin Type B / genetics
  • Minichromosome Maintenance Complex Component 4 / genetics
  • Minichromosome Maintenance Proteins / metabolism*
  • Nuclear Proteins / metabolism
  • Replication Origin*

Substances

  • CDC6 protein, human
  • CDT1 protein, human
  • Carrier Proteins
  • Cell Cycle Proteins
  • Chromatin
  • GRWD1 protein, human
  • Histones
  • Lamin Type B
  • Nuclear Proteins
  • MCM4 protein, human
  • Minichromosome Maintenance Complex Component 4
  • Minichromosome Maintenance Proteins