Identification of therapeutic targets for childhood severe asthmatics with DNA microarray

Allergol Immunopathol (Madr). 2016 Jan-Feb;44(1):76-82. doi: 10.1016/j.aller.2015.03.002. Epub 2015 May 12.

Abstract

Background: In this study, we aimed to discover potential gene targets for treating childhood asthmatics.

Methods: With the microarray data downloaded from Gene Expression Omnibus (GEO) database, we explored the common differentially expressed genes (DEGs) in children with severe asthma and mild asthma (SA vs. MA) or healthy controls (SA vs. HC). Then we performed hierarchical clustering, function and pathway enrichment analysis for the common DEGs.

Results: A total of 81 genes were identified to be differentially expressed in SA vs. MA and SA vs. HC group. Hierarchical clustering of the 81 DEGs could crudely separate the SA, MA and healthy individuals. The overrepresented GO terms of the common DEGs were related with lipid biosynthetic process (21.74%), pigment biosynthetic process (13.04%) and nucleoside monophosphate metabolic process (13.04%). Only one pathway was significantly enriched, which was the antigen processing and presentation pathway involved with CD4 and RFX gene.

Conclusions: The antigen processing and presentation pathway and lipid biosynthetic process may play roles in the pathogenesis of severe asthma. CD4 and RFX provide a therapeutic possibility for childhood asthma.

Keywords: Childhood asthma; Differentially expressed genes; Function and pathway enrichment; Hierarchical clustering.

MeSH terms

  • Antigen Presentation* / genetics
  • Asthma / drug therapy*
  • Asthma / genetics
  • CD4 Antigens / genetics
  • Child
  • Cluster Analysis
  • Computational Biology
  • DNA-Binding Proteins / genetics
  • Disease Progression
  • Humans
  • Lipid Metabolism* / genetics
  • Molecular Targeted Therapy*
  • Oligonucleotide Array Sequence Analysis
  • Pigmentation* / genetics
  • Regulatory Factor X Transcription Factors
  • Transcription Factors / genetics
  • Transcriptome
  • Uridine Monophosphate / metabolism

Substances

  • CD4 Antigens
  • DNA-Binding Proteins
  • Regulatory Factor X Transcription Factors
  • Transcription Factors
  • Uridine Monophosphate