BRCA1-associated protein 1 (BAP1) deubiquitinase antagonizes the ubiquitin-mediated activation of FoxK2 target genes

J Biol Chem. 2015 Jan 16;290(3):1580-91. doi: 10.1074/jbc.M114.609834. Epub 2014 Dec 1.

Abstract

BRCA1-associated protein 1 (BAP1), which is frequently mutated in cancer, functions as a deubiquitinase (DUB) for histone H2A. Although BAP1 interacts with a transcriptional regulator, HCF-1, and transcription factors FoxK1 and FoxK2, how BAP1 controls gene expression remains unclear. This study investigates the importance of BAP1 DUB activity and the interactions with FoxK2 and HCF-1 in the regulation of FoxK2 target genes. We show that FoxK2 recruits BAP1 to the target genes through the forkhead-associated domain, which interacts with Thr(P)-493 on BAP1. BAP1, in turn, recruits HCF-1, thereby forming a ternary complex in which BAP1 bridges FoxK2 and HCF-1. BAP1 represses FoxK2 target genes, and this effect requires BAP1 DUB activity but not interaction with HCF-1. Importantly, BAP1 depletion causes up-regulation of FoxK2 target genes only in the presence of the Ring1B-Bmi1 complex, an E3 ubiquitin ligase for histone H2A, indicating an antagonizing role of BAP1 against Ring1B-Bmi1. Our findings suggest that BAP1 deficiency causes increased expression of target genes in a Ring1B-Bmi1-dependent manner.

Keywords: Deubiquitylation (Deubiquitination); Gene Expression; Phosphorylation; Tumor Suppressor Gene; Ubiquitin.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Chromatin / metabolism
  • Forkhead Transcription Factors / metabolism*
  • Gene Expression Regulation, Enzymologic*
  • Gene Expression Regulation, Neoplastic
  • Glutathione Transferase / metabolism
  • HEK293 Cells
  • Humans
  • Molecular Sequence Data
  • Neoplasms / metabolism
  • Phosphorylation
  • Polycomb Repressive Complex 1 / metabolism*
  • Protein Binding
  • Protein Structure, Tertiary
  • RNA Interference
  • Recombinant Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Tumor Suppressor Proteins / metabolism*
  • Ubiquitin / metabolism*
  • Ubiquitin Thiolesterase / metabolism*
  • Up-Regulation

Substances

  • BAP1 protein, human
  • BMI1 protein, human
  • Chromatin
  • Forkhead Transcription Factors
  • Recombinant Proteins
  • Tumor Suppressor Proteins
  • Ubiquitin
  • interleukin binding factor
  • Polycomb Repressive Complex 1
  • RNF2 protein, human
  • Glutathione Transferase
  • Ubiquitin Thiolesterase