LMKB/MARF1 localizes to mRNA processing bodies, interacts with Ge-1, and regulates IFI44L gene expression

PLoS One. 2014 Apr 22;9(4):e94784. doi: 10.1371/journal.pone.0094784. eCollection 2014.

Abstract

The mRNA processing body (P-body) is a cellular structure that regulates the stability of cytoplasmic mRNA. MARF1 is a murine oocyte RNA-binding protein that is associated with maintenance of mRNA homeostasis and genomic stability. In this study, autoantibodies were used to identify Limkain B (LMKB), the human orthologue of MARF1, as a P-body component. Indirect immunofluorescence demonstrated that Ge-1 (a central component of the mammalian core-decapping complex) co-localized with LMKB in P-bodies. Two-hybrid and co-immunoprecipitation assays were used to demonstrate interaction between Ge-1 and LMKB. The C-terminal 120 amino acids of LMKB mediated interaction with Ge-1 and the N-terminal 1094 amino acids of Ge-1 were required for interaction with LMKB. LMKB is the first protein identified to date that interacts with this portion of Ge-1. LMKB was expressed in human B and T lymphocyte cell lines; depletion of LMKB increased expression of IFI44L, a gene that has been implicated in the cellular response to Type I interferons. The interaction between LMKB/MARF1, a protein that contains RNA-binding domains, and Ge-1, which interacts with core-decapping proteins, suggests that LMKB has a role in the regulation of mRNA stability. LMKB appears to have different functions in different cell types: maintenance of genomic stability in developing oocytes and possible dampening of the inflammatory response in B and T cells.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antigens / genetics*
  • Antigens / metabolism
  • Autoantibodies / blood
  • Autoantigens / chemistry
  • Autoantigens / genetics
  • Autoantigens / metabolism*
  • Cell Cycle Proteins
  • Cell Line
  • Cytoplasmic Structures / metabolism*
  • Cytoskeletal Proteins / genetics*
  • Cytoskeletal Proteins / metabolism
  • Endoribonucleases
  • Fluorescent Antibody Technique
  • Gene Knockdown Techniques
  • Humans
  • Immunoprecipitation
  • Protein Binding
  • Protein Transport
  • Proteins / metabolism*
  • RNA Processing, Post-Transcriptional / genetics*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Two-Hybrid System Techniques

Substances

  • Antigens
  • Autoantibodies
  • Autoantigens
  • Cell Cycle Proteins
  • Cytoskeletal Proteins
  • EDC4 protein, human
  • IFI44 protein, human
  • Proteins
  • RNA, Messenger
  • Endoribonucleases
  • MARF1 protein, human