DNA polymerase V kinetics support the instructive nature of an oxidized abasic lesion in Escherichia coli

Biochemistry. 2013 Sep 17;52(37):6301-3. doi: 10.1021/bi400997h. Epub 2013 Sep 9.

Abstract

Translesion synthesis past an oxidized abasic site, 2-deoxyribonolactone, in Escherichia coli results in high levels of dG incorporation and is dependent upon DNA polymerase V (Pol V). Kinetic experiments performed here affirm that Pol V preferentially incorporates dG opposite 2-deoxyribonolactone (L). Pol V discriminates between dG and dA on the basis of the apparent KD, suggesting that L provides instructive structural information to the enzyme despite lacking a Watson-Crick base.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • DNA-Directed DNA Polymerase / metabolism*
  • Deoxyguanine Nucleotides / metabolism*
  • Escherichia coli / genetics
  • Escherichia coli Proteins / metabolism*
  • Kinetics
  • Oxidation-Reduction
  • Sugar Acids / chemistry

Substances

  • Deoxyguanine Nucleotides
  • Escherichia coli Proteins
  • Sugar Acids
  • 2,4,5-trihydroxypentanoic acid gamma-lactone
  • DNA polymerase V, E coli
  • DNA-Directed DNA Polymerase