Heterogeneous nuclear ribonucleoprotein R cooperates with mediator to facilitate transcription reinitiation on the c-Fos gene

PLoS One. 2013 Aug 13;8(8):e72496. doi: 10.1371/journal.pone.0072496. eCollection 2013.

Abstract

The c-fos gene responds to extracellular stimuli and undergoes robust but transient transcriptional activation. Here we show that heterogeneous nuclear ribonucleoprotein R (hnRNP R) facilitates transcription reinitiation of the c-fos promoter in vitro in cooperation with Mediator. Consistently, hnRNP R interacts with the Scaffold components (Mediator, TBP, and TFIIH) as well as TFIIB, which recruits RNA polymerase II (Pol II) and TFIIF to Scaffold. The cooperative action of hnRNP R and Mediator is diminished by the cyclin-dependent kinase 8 (CDK8) module, which is comprised of CDK8, Cyclin C, MED12 and MED13 of the Mediator subunits. Interestingly, we find that the length of the G-free cassettes, and thereby their transcripts, influences the hnRNP R-mediated facilitation of reinitiation. Indeed, indicative of a possible role of the transcript in facilitating transcription reinitiation, the RNA transcript produced from the G-free cassette interacts with hnRNP R through its RNA recognition motifs (RRMs) and arginine-glycine-glycine (RGG) domain. Mutational analyses of hnRNP R indicate that facilitation of initiation and reinitiation requires distinct domains of hnRNP R. Knockdown of hnRNP R in mouse cells compromised rapid induction of the c-fos gene but did not affect transcription of constitutive genes. Together, these results suggest an important role for hnRNP R in regulating robust response of the c-fos gene.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Carrier Proteins / metabolism*
  • Cell Line
  • Cyclin C / metabolism
  • Cyclin-Dependent Kinase 8 / metabolism
  • Gene Expression Regulation
  • Heterogeneous-Nuclear Ribonucleoproteins / chemistry
  • Heterogeneous-Nuclear Ribonucleoproteins / metabolism*
  • Mice
  • Promoter Regions, Genetic
  • Protein Binding
  • Protein Interaction Domains and Motifs
  • Proto-Oncogene Proteins c-fos / genetics*
  • TATA-Box Binding Protein / metabolism
  • Transcription Factor TFIIB / metabolism
  • Transcription Initiation, Genetic*

Substances

  • Carrier Proteins
  • Cyclin C
  • Heterogeneous-Nuclear Ribonucleoproteins
  • Hnrpr protein, mouse
  • Proto-Oncogene Proteins c-fos
  • TATA-Box Binding Protein
  • Transcription Factor TFIIB
  • Cyclin-Dependent Kinase 8

Grants and funding

This work was supported by JSPS KAKENHI Grant Numbers 23770200 (AF) and 25460354 (KH). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.