The RNA Pol II sub-complex hsRpb4/7 is required for viability of multiple human cell lines

Protein Cell. 2012 Nov;3(11):846-54. doi: 10.1007/s13238-012-2085-7. Epub 2012 Oct 17.

Abstract

The evolutionarily conserved RNA Polymerase II Rpb4/7 sub-complex has been thoroughly studied in yeast and impacts gene expression at multiple levels including transcription, mRNA processing and decay. In addition Rpb4/7 exerts differential effects on gene expression in yeast and Rpb4 is not obligatory for yeast (S. cerevisiae) survival. Specialised roles for human (hs) Rpb4/7 have not been extensively described and we have probed this question by depleting hsRpb4/7 in established human cell lines using RNA interference. We find that Rpb4/7 protein levels are inter-dependent and accordingly, the functional effects of depleting either protein are co-incident. hsRpb4/7 exhibits gene-specific effects and cells initially remain viable upon hsRpb4/7 depletion. However prolonged hsRpb4/7 depletion is cytotoxic in the range of cell lines tested. Protracted cell death occurs by an unknown mechanism and in some cases is accompanied by a pronounced elongated cell morphology. In conclusion we provide evidence for a gene-specific role of hsRpb4/7 in human cell viability.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line
  • Cell Nucleus / metabolism
  • Cell Survival / drug effects
  • Gene Expression Profiling
  • HeLa Cells
  • Humans
  • RNA Interference
  • RNA Polymerase II / antagonists & inhibitors
  • RNA Polymerase II / genetics
  • RNA Polymerase II / metabolism*
  • RNA, Small Interfering / pharmacology

Substances

  • RNA, Small Interfering
  • POLR2D protein, human
  • POLR2G protein, human
  • RNA Polymerase II