Identification and structural characterization of two 14-3-3 binding sites in the human peptidylarginine deiminase type VI

J Struct Biol. 2012 Oct;180(1):65-72. doi: 10.1016/j.jsb.2012.05.010. Epub 2012 May 24.

Abstract

The regulation and function of peptidylarginine deiminase isoform VI (PAD6), which is a highly abundant protein associated with the cytoplasmic lattices in mammalian oocytes, is poorly understood so far. It has been shown previously, that 14-3-3 proteins, a class of regulatory adapter proteins ubiquitous in eukaryotes, bind to PAD6 in vivo in a phosphorylation dependent manner. Here we identify possible 14-3-3 binding sites in human PAD6 by in silico methods, looking for conserved, surface exposed serine residues. Two of these sites were confirmed as 14-3-3 binding sites by fluorescence polarization competition and X-ray crystallography. We furthermore suggest a role of RSK-type kinases in the phosphorylation of one of these two binding sites and provide evidence in the form of in vitro kinase assays with p70S6 kinase and RSK1.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 14-3-3 Proteins / chemistry*
  • Amino Acid Sequence
  • Binding Sites
  • Biomarkers, Tumor / chemistry*
  • Crystallography, X-Ray
  • Exonucleases / chemistry*
  • Exoribonucleases
  • Humans
  • Hydrolases / chemistry*
  • Hydrophobic and Hydrophilic Interactions
  • Models, Molecular
  • Molecular Sequence Data
  • Peptide Fragments / chemistry
  • Phosphoproteins / chemistry
  • Phosphorylation
  • Protein Binding
  • Protein Interaction Domains and Motifs
  • Protein Processing, Post-Translational
  • Protein Structure, Secondary
  • Protein-Arginine Deiminase Type 6
  • Protein-Arginine Deiminases
  • Ribosomal Protein S6 Kinases, 90-kDa / chemistry

Substances

  • 14-3-3 Proteins
  • Biomarkers, Tumor
  • Peptide Fragments
  • Phosphoproteins
  • Ribosomal Protein S6 Kinases, 90-kDa
  • Hydrolases
  • Exonucleases
  • Exoribonucleases
  • SFN protein, human
  • PADI6 protein, human
  • Protein-Arginine Deiminase Type 6
  • Protein-Arginine Deiminases

Associated data

  • PDB/4DAT
  • PDB/4DAU