Site-directed mutagenesis of recombinant rat DNA polymerase beta: involvement of arginine-183 in primer recognition

Biochemistry. 1990 May 29;29(21):5027-34. doi: 10.1021/bi00473a005.

Abstract

By site-directed mutagenesis using synthetic oligonucleotides, amino acid residues 181Phe-Arg-Arg183 of recombinant rat DNA polymerase beta were replaced by other amino acids to clarify the roles of these residues in the DNA synthesizing reaction. Replacement of Phe-181 by alanine reduced the enzyme activity only 30%. Replacement of Arg-182 by alanine and glutamine resulted in reduction of the activity by about 67% and 95%, respectively. The Arg-182----Gln replacement increased the binding strength to single-stranded DNA but did not significantly change the Km's for the primer and dTTP, suggesting that Arg-182 is involved in modulation of binding to the template rather than to the primer or deoxyribonucleoside triphosphate. Replacement of Arg-183 by Gln resulted in reduction of the activity by about 95%, and this change, although causing little change in binding strength to single-stranded DNA, resulted in a 3-4-fold increase in the Km's for the primer and deoxyribonucleoside triphosphate. A more dramatic change was observed when Arg-183 was replaced by Ala, which resulted in a 99.98% reduction of enzyme activity. Although the Km for deoxyribonucleoside triphosphate of this mutant enzyme was hardly changed, that for the primer increased 159-fold. Therefore, it is concluded that Arg-183 occupies an important part of the primer recognition site of DNA polymerase beta.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Arginine / genetics*
  • Arginine / metabolism
  • Base Sequence
  • DNA Polymerase I / genetics*
  • DNA Polymerase I / metabolism
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Kinetics
  • Molecular Sequence Data
  • Mutation*
  • Nucleic Acid Precursors / genetics
  • Oligonucleotides / metabolism
  • Rats
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Substrate Specificity

Substances

  • Nucleic Acid Precursors
  • Oligonucleotides
  • Recombinant Proteins
  • Arginine
  • DNA Polymerase I