Genome-wide examination of genetic variants associated with response to platinum-based chemotherapy in patients with small-cell lung cancer

Pharmacogenet Genomics. 2010 Jun;20(6):389-95. doi: 10.1097/FPC.0b013e32833a6890.

Abstract

Objectives: Small-cell lung cancer (SCLC) accounts for about 20% of total lung cancer, and systemic chemotherapy is the major therapy for all stages of SCLC. Although most SCLC patients are characterized by initial chemosensitivity to the standard first-line platinum-based regimens, a significant fraction of patients are intrinsic nonresponders.

Methods: Genome-wide scan of 440 093 single-nucleotide polymorphisms (SNPs) was conducted using peripheral blood DNA to identify variants associated with response to first-line carboplatin or cisplatin plus etoposide chemotherapy in 245 patients with SCLC and the results were replicated in another set of 183 patients.

Results: By set association analysis, 20 SNPs were identified to be associated with treatment response, with odds ratios (95% confidence interval) ranging from 2.36 (1.56-3.57) to 4.38 (2.12-9.29) and these results were confirmed in the replication phase. Most of these SNPs (14/20) were clustered on chromosomes 22p11.23, 6q24.3, and 20p12.2 containing BTBD3, STXBP5, and BCR genes.

Conclusion: Germline genetic variations influence the effectiveness of platinum-based chemotherapy of SCLC and further studies are needed to test the value of these findings for personalized chemotherapy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carboplatin / administration & dosage
  • Carboplatin / therapeutic use
  • Cisplatin / administration & dosage
  • Cisplatin / therapeutic use
  • Etoposide / administration & dosage
  • Female
  • Genes
  • Genome
  • Humans
  • Inuit / genetics
  • Lung Neoplasms* / drug therapy
  • Lung Neoplasms* / genetics
  • Lung Neoplasms* / pathology
  • Male
  • Middle Aged
  • Nerve Tissue Proteins
  • Platinum / therapeutic use
  • Polymorphism, Single Nucleotide
  • R-SNARE Proteins
  • Small Cell Lung Carcinoma

Substances

  • Nerve Tissue Proteins
  • R-SNARE Proteins
  • STXBP5 protein, human
  • Platinum
  • Etoposide
  • Carboplatin
  • Cisplatin