Accurate in vitro translesion synthesis by Escherichia coli DNA polymerase I (large fragment) on a site-specific, aminofluorene-modified oligonucleotide

Carcinogenesis. 1991 Sep;12(9):1641-6. doi: 10.1093/carcin/12.9.1641.

Abstract

We have measured the accuracy of in vitro synthesis by DNA polymerase I (large fragment) during translesion synthesis past an aminofluorene (AF) adduct. These studies were carried out using a site-specifically modified template which contained a single AF adduct. The template was prepared by first modifying the lone guanine in a 17 base long oligonucleotide and extensively purifying and characterizing this product. The modified 17mer was then ligated to a synthetic duplex to produce a 31 nucleotide long template strand containing the AF adduct annealed to a 14mer, such that the 3'-hydroxyl primer terminus was four nucleotides before the modified guanine. Synthesis on this template by DNA polymerase I efficiently bypassed the AF adduct and produced full-length duplex 31mers. T7 DNA polymerase, on the other hand, was unable to utilize the AF-modified template though it was active on an identical unmodified one. The strand synthesized by DNA polymerase I was then separated from the modified strand, annealed to a complementary oligonucleotide, and the resulting heteroduplex cloned into M13. Each of the 49 clones isolated had sequences which indicated that cytidine had been incorporated opposite the AF-modified guanine.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Carcinogens*
  • DNA / chemistry
  • DNA Adducts*
  • DNA Polymerase I / metabolism*
  • DNA Repair*
  • Electrophoresis, Polyacrylamide Gel
  • Escherichia coli / enzymology*
  • Fluorenes / chemistry
  • Fluorenes / toxicity*
  • Molecular Sequence Data
  • Nucleic Acid Heteroduplexes
  • Oligonucleotides / chemistry*
  • T-Phages / genetics
  • Templates, Genetic

Substances

  • 2-aminofluorene-DNA complex
  • Carcinogens
  • DNA Adducts
  • Fluorenes
  • Nucleic Acid Heteroduplexes
  • Oligonucleotides
  • 2-aminofluorene
  • DNA
  • DNA Polymerase I