RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins

Proc Natl Acad Sci U S A. 1991 Mar 15;88(6):2495-9. doi: 10.1073/pnas.88.6.2495.

Abstract

An RNA recognition motif (RRM) of approximately 80 amino acids constitutes the core of RNA-binding domains found in a large family of proteins involved in RNA processing. The U1 RNA-binding domain of the A protein component of the human U1 small nuclear ribonucleoprotein (RNP), which encompasses the RRM sequence, was analyzed by using NMR spectroscopy. The domain of the A protein is a highly stable monomer in solution consisting of four antiparallel beta-strands and two alpha-helices. The highly conserved RNP1 and RNP2 consensus sequences, containing residues previously suggested to be involved in nucleic acid binding, are juxtaposed in adjacent beta-strands. Conserved aromatic side chains that are critical for RNA binding are clustered on the surface of the molecule adjacent to a variable loop that influences recognition of specific RNA sequences. The secondary structure and topology of the RRM are similar to those of ribosomal proteins L12 and L30, suggesting a distant evolutionary relationship between these two types of RNA-associated proteins.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Escherichia coli / genetics
  • Magnetic Resonance Spectroscopy / methods
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Conformation
  • RNA, Small Nuclear / metabolism*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Ribonucleoproteins / chemistry
  • Ribonucleoproteins / metabolism*
  • Ribonucleoproteins, Small Nuclear
  • Ribosomal Proteins / chemistry
  • Ribosomal Proteins / metabolism*
  • Sequence Homology, Nucleic Acid

Substances

  • RNA, Small Nuclear
  • Recombinant Proteins
  • Ribonucleoproteins
  • Ribonucleoproteins, Small Nuclear
  • Ribosomal Proteins