A human gene (AHNAK) encoding an unusually large protein with a 1.2-microns polyionic rod structure

Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5472-6. doi: 10.1073/pnas.89.12.5472.

Abstract

We report here the identification and partial characterization of a human gene (designated AHNAK) that encodes an unusually large protein (approximately 700 kDa). AHNAK is expressed by means of a 17.5-kilobase mRNA in diverse cellular lineages but is typically repressed in cell lines derived from human neuroblastomas and in several other types of tumors. Unique-sequence domains at the two ends of the protein flank a large internal domain (approximately 4300 amino acids) composed of highly conserved repeated elements, most of which are 128 amino acids in length. The repeated elements in turn display a redundant motif, marked by the recurrence of proline at every seventh residue. Within these sequences, hydrophobic and hydrophilic residues alternate in a manner that is incompatible with a helical coiled-coil structure. Instead, we propose a structure resembling a beta-strand but with a periodicity of 2.33. The structure would engender a polyionic rod approximately 1.2 microns long. Preliminary evidence indicates that the protein resides predominantly within the nucleus, but no function has yet been discerned.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adrenal Gland Neoplasms / genetics
  • Amino Acid Sequence
  • Cell Line
  • Cloning, Molecular
  • DNA, Neoplasm / genetics
  • DNA, Neoplasm / isolation & purification
  • Genes*
  • Humans
  • Membrane Proteins*
  • Models, Molecular
  • Molecular Sequence Data
  • Neoplasm Proteins / genetics*
  • Neuroblastoma / genetics
  • Pheochromocytoma / genetics
  • Protein Conformation
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Restriction Mapping

Substances

  • AHNAK protein, human
  • DNA, Neoplasm
  • Membrane Proteins
  • Neoplasm Proteins
  • RNA, Messenger

Associated data

  • GENBANK/M80899
  • GENBANK/M80902