DNA binding properties of human DNA polymerase eta: implications for fidelity and polymerase switching of translesion synthesis

Genes Cells. 2004 Dec;9(12):1139-50. doi: 10.1111/j.1365-2443.2004.00797.x.

Abstract

The human XPV (xeroderma pigmentosum variant) gene is responsible for the cancer-prone xeroderma pigmentosum syndrome and encodes DNA polymerase eta (pol eta), which catalyses efficient translesion synthesis past cis-syn cyclobutane thymine dimers (TT dimers) and other lesions. The fidelity of DNA synthesis by pol eta on undamaged templates is extremely low, suggesting that pol eta activity must be restricted to damaged sites on DNA. Little is known, however, about how the activity of pol eta is targeted and restricted to damaged DNA. Here we show that pol eta binds template/primer DNAs regardless of the presence of TT dimers. Rather, enhanced binding to template/primer DNAs containing TT dimers is only observed when the 3'-end of the primer is an adenosine residue situated opposite the lesion. When two nucleotides have been incorporated into the primer beyond the TT dimer position, the pol eta-template/primer DNA complex is destabilized, allowing DNA synthesis by DNA polymerases alpha or delta to resume. Our study provides mechanistic explanations for polymerase switching at TT dimer sites.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA / biosynthesis*
  • DNA Damage*
  • DNA Polymerase I / metabolism
  • DNA Polymerase III / metabolism
  • DNA Primers / metabolism
  • DNA Repair / physiology*
  • DNA-Directed DNA Polymerase / genetics
  • DNA-Directed DNA Polymerase / metabolism*
  • DNA-Directed DNA Polymerase / physiology*
  • Enzyme Stability
  • Humans
  • Molecular Sequence Data
  • Pyrimidine Dimers / metabolism
  • Templates, Genetic

Substances

  • DNA Primers
  • Pyrimidine Dimers
  • DNA
  • DNA Polymerase I
  • DNA Polymerase III
  • DNA-Directed DNA Polymerase
  • Rad30 protein