Ribosomal protein L7a binds RNA through two distinct RNA-binding domains

Biochem J. 2005 Jan 1;385(Pt 1):289-99. doi: 10.1042/BJ20040371.

Abstract

The human ribosomal protein L7a is a component of the major ribosomal subunit. We previously identified three nuclear-localization-competent domains within L7a, and demonstrated that the domain defined by aa (amino acids) 52-100 is necessary, although not sufficient, to target the L7a protein to the nucleoli. We now demonstrate that L7a interacts in vitro with a presumably G-rich RNA structure, which has yet to be defined. We also demonstrate that the L7a protein contains two RNA-binding domains: one encompassing aa 52-100 (RNAB1) and the other encompassing aa 101-161 (RNAB2). RNAB1 does not contain any known nucleic-acid-binding motif, and may thus represent a new class of such motifs. On the other hand, a specific region of RNAB2 is highly conserved in several other protein components of the ribonucleoprotein complex. We have investigated the topology of the L7a-RNA complex using a recombinant form of the protein domain that encompasses residues 101-161 and a 30mer poly(G) oligonucleotide. Limited proteolysis and cross-linking experiments, and mass spectral analyses of the recombinant protein domain and its complex with poly(G) revealed the RNA-binding region.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Amino Acid Sequence
  • Conserved Sequence
  • Cross-Linking Reagents
  • Humans
  • Molecular Sequence Data
  • Molecular Weight
  • Nucleic Acid Conformation
  • Protein Structure, Tertiary
  • RNA / chemistry
  • RNA / genetics
  • RNA / metabolism*
  • RNA, Small Nuclear / chemistry
  • RNA, Small Nuclear / genetics
  • RNA, Small Nuclear / metabolism
  • RNA-Binding Proteins / chemistry*
  • RNA-Binding Proteins / metabolism*
  • Ribosomal Proteins / chemistry*
  • Ribosomal Proteins / metabolism*
  • Substrate Specificity
  • Trypsin / metabolism

Substances

  • Cross-Linking Reagents
  • RNA, Small Nuclear
  • RNA-Binding Proteins
  • RPL7A protein, human
  • Ribosomal Proteins
  • U4 small nuclear RNA
  • RNA
  • Trypsin