Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase

Structure. 2004 May;12(5):751-64. doi: 10.1016/j.str.2004.02.038.

Abstract

Uridine-cytidine kinase (UCK) catalyzes the phosphorylation of uridine and cytidine and activates pharmacological ribonucleoside analogs. Here we present the crystal structures of human UCK alone and in complexes with a substrate, cytidine, a feedback inhibitor, CTP or UTP, and with phosphorylation products, CMP and ADP, respectively. Free UCK takes an alpha/beta mononucleotide binding fold and exists as a homotetramer with 222 symmetry. Upon inhibitor binding, one loop region was loosened, causing the UCK tetramer to be distorted. Upon cytidine binding, a large induced fit was observed at the uridine/cytidine binding site, which endows UCK with a strict specificity for pyrimidine ribonucleosides. The first UCK structure provided the structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase, which give clues for the design of novel antitumor and antiviral ribonucleoside analogs that inhibit RNA synthesis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Amino Acid Sequence
  • Binding Sites
  • Feedback, Physiological / physiology
  • Humans
  • Ligands
  • Molecular Sequence Data
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary
  • Substrate Specificity
  • Ultracentrifugation
  • Uridine Kinase / antagonists & inhibitors
  • Uridine Kinase / chemistry*
  • Uridine Kinase / metabolism

Substances

  • Ligands
  • Adenosine Triphosphate
  • Uridine Kinase

Associated data

  • PDB/1UDW
  • PDB/1UEI
  • PDB/1UEJ
  • PDB/1UFQ
  • PDB/1UJ2