U87 RNA, a novel C/D box small nucleolar RNA from mammalian cells

Gene. 2002 Jun 12;292(1-2):199-204. doi: 10.1016/s0378-1119(02)00678-9.

Abstract

A novel 72 nt small nucleolar RNA (snoRNA) called U87 was found in rat liver cells. This RNA possesses the features of C/D box snoRNA family: boxes C, D', C', D, and 11 nt antisense element complementary to 28S ribosomal RNA (rRNA). The vast majority of C/D box snoRNAs direct site-specific 2'-O-ribose methylation of rRNAs. U87 RNA is suggested to be involved in 2'-O-methylation of a G(3468) residue in 28S rRNA. U87 RNA was detected in different mammalian species with slight length variability. Rat and mouse U87 RNA gene was characterized. Unlike the majority of C/D box snoRNAs U87 RNA lacks the terminal stem required for snoRNA processing. However, U87 gene is flanked by 7 bp inverted repeats potentially able to form a terminal stem in U87 RNA precursor.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Blotting, Northern
  • Cats
  • DNA, Complementary / chemistry
  • DNA, Complementary / genetics
  • HeLa Cells
  • Humans
  • Liver / metabolism
  • Mice
  • Molecular Sequence Data
  • RNA / genetics
  • RNA / metabolism
  • RNA, Small Nucleolar / genetics*
  • RNA, Small Nucleolar / metabolism
  • Rats
  • Sequence Alignment
  • Sequence Analysis, DNA

Substances

  • DNA, Complementary
  • RNA, Small Nucleolar
  • RNA

Associated data

  • GENBANK/AF272707