In vivo mutagenesis by Escherichia coli DNA polymerase I. Ile(709) in motif A functions in base selection

J Biol Chem. 2001 Dec 14;276(50):46759-64. doi: 10.1074/jbc.M104780200. Epub 2001 Oct 15.

Abstract

The fidelity of DNA replication by Escherichia coli DNA polymerase I (pol I) was assessed in vivo using a reporter plasmid bearing a ColE1-type origin and an ochre codon in the beta-lactamase gene. We screened 53 single mutants within the region Val(700)-Arg(712) in the polymerase active-site motif A. Only replacement of Ile(709) yielded mutator polymerases, with substitution of Met, Asn, Phe, or Ala increasing the beta-lactamase reversion frequency 5-23-fold. Steady-state kinetic analysis of the I709F polymerase revealed reductions in apparent K(m) values for both insertion of non-complementary nucleotides and extension of mispaired primer termini. Abolishment of the 3'-5' exonuclease activity of wild-type pol I increased mutation frequency 4-fold, whereas the combination of I709F and lack of the 3'-5' exonuclease yielded a 400-fold increase. We conclude that accurate discrimination of the incoming nucleotide at the polymerase domain is more critical than exonucleolytic proofreading for the fidelity of pol I in vivo. Surprisingly, the I709F polymerase enhanced mutagenesis in chromosomal DNA, although the increase was 10-fold less than in plasmid DNA. Our findings indicate the feasibility of obtaining desired mutations by replicating a target gene at a specific locus in a plasmid under continuous selection pressure.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Motifs
  • Base Pair Mismatch
  • Binding Sites
  • Codon, Terminator
  • DNA Polymerase I / metabolism*
  • Escherichia coli / enzymology*
  • Genes, Reporter
  • Kinetics
  • Mutagenesis, Site-Directed*
  • Mutation
  • Plasmids / metabolism
  • Tryptophan / chemistry
  • beta-Lactamases / metabolism

Substances

  • Codon, Terminator
  • Tryptophan
  • DNA Polymerase I
  • beta-Lactamases