LOCUS NP_523377 2224 aa linear INV 04-JAN-2008
DEFINITION rudimentary CG18572-PA, isoform A [Drosophila melanogaster].
ACCESSION NP_523377
VERSION NP_523377.1 GI:24642586
DBSOURCE REFSEQ: accession NM_078653.1
KEYWORDS .
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (residues 1 to 2224)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence Finishing and Mapping of Drosophila melanogaster
Heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 2 (residues 1 to 2224)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 Annotation of Drosophila melanogaster
Heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REFERENCE 3 (residues 1 to 2224)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput. Biol. 1 (2), e22 (2005)
PUBMED 16110336
REFERENCE 4 (residues 1 to 2224)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., de Carvalho,A.B.,
Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biology 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 5 (residues 1 to 2224)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol. 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 6 (residues 1 to 2224)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol. 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 7 (residues 1 to 2224)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol. 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 8 (residues 1 to 2224)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 9 (residues 1 to 2224)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 10 (residues 1 to 2224)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 11 (residues 1 to 2224)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 12 (residues 1 to 2224)
AUTHORS Smith,C.D., Shu,S., Yandell,M.D. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 13 (residues 1 to 2224)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The
reference sequence was derived from AAF48639.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..2224
/organism="Drosophila melanogaster"
/db_xref="taxon:7227"
/chromosome="X"
Protein 1..2224
/product="rudimentary CG18572-PA, isoform A"
/EC_number="2.1.3.2"
/EC_number="6.3.4.16"
/EC_number="3.5.2.3"
/name="CG18572 gene product from transcript CG18572-RA"
/note="Suppressor-of-black; carbamoylphosphate synthetase;
rudimentary gene"
/calculated_mol_wt=246542
CDS 1..2224
/gene="r"
/locus_tag="Dmel_CG18572"
/gene_synonym="ACT"
/gene_synonym="CAD"
/gene_synonym="CG18572"
/gene_synonym="CG4601"
/gene_synonym="CPS"
/gene_synonym="DHO"
/gene_synonym="DRORUD"
/gene_synonym="GAT"
/gene_synonym="PYR1"
/gene_synonym="Su(b)"
/gene_synonym="csp2"
/gene_synonym="fs(1)829"
/gene_synonym="fs(1)M34"
/gene_synonym="l(1)Ab"
/coded_by="NM_078653.1:245..6919"
/db_xref="FLYBASE:FBgn0003189"
/db_xref="GeneID:32640"
ORIGIN
1 mastdcylal edgtvlpgys fgyvpsenes kvgfggevvf qtgmvgytea ltdrsysgqi
61 lvltyplign ygvpapdede hglplhfewm kgvvqatalv vgevaeeafh wrkwktlpdw
121 lkqhkvpgiq didtraltkk lreqgsmlgk ivyekppveg lpkssfvdpn vrnlakecsv
181 kerqvygnpn gkgpriaild cglklnqlrc llqrgasvtl lpwsarlede qfdalflsng
241 pgnpescdqi vqqvrkviee gqkpvfgicl ghqllakaig cstykmkygn rghnlpclhr
301 atgrclmtsq nhgyavdleq lpdgwselfv nandgtnegi vhaskpyfsv qfhpehhagp
361 qdteflfdvf mesiqqkdlt ipqlieqrlr pttpaidsap vmprkvlilg sgglsigqag
421 efdysgsqai kamresniqt vlinpniatv qtskgmadkc yflpltphyv eqvikserpn
481 gvlltfggqt alncgvqler agvfskynvr ilgtpiqsii etedrklfae rvneigeqva
541 pseavysvaq aldaasrlgy pvmaraafsl gglgsgfann eeelqslaqq alahssqliv
601 dkslkgwkev eyevvrdayn ncitvcnmen fdplgihtge sivvapsqtl sdreyqmlrs
661 talkvirhfg vvgecniqya lcphseqyyi ievnarlsrs salaskatgy playvaakla
721 lglplpdikn svtgnttacf epsldycvvk iprwdlakfv rvskhigssm ksvgevmaig
781 rnfeeafqka lrmvdsdvlg fdpdvvplnk eqlaeqlsep tdrrpfviaa alqlgmslre
841 lhqltnidyw flekleriil lqslltrngs rtdaalllka krfgfsdkqi akyikstela
901 vrhqrqefgi rphvkqidtv agewpastny lyhtyngseh dvdfpgghti vvgsgvyrig
961 ssvefdwcav gclrelrklq rptiminynp etvstdydmc drlyfeeisf evvmdiyeme
1021 nsegiilsmg gqlpnniamd lhrqqakvlg tspesidcae nrfkfsrmld rkgilqprwk
1081 eltnlqsaie fceevgypcl vrpsyvlsga amnvaysnqd letylnaase vsrehpvvis
1141 kflteakeid vdavasdgri lcmavsehve nagvhsgdat lvtppqdlna etleaikrit
1201 cdlasvldvt gpfnmqliak nnelkviecn vrvsrsfpfv sktldhdfva tatraivgld
1261 vepldvlhgv gkvgvkvpqf sfsrlagadv qlgvemastg evacfgdnry eaylkammst
1321 gfqipknavl lsigsfkhkm ellpsirdla kmgyklyasm gtgdfyaehg vnvesvqwtf
1381 dkttpdding elrhlaefla nkqfdlvinl pmsgggarrv ssfmthgyrt rrlavdysip
1441 lvtdvkctkl lvesmrmngg kppmkthtdc mtsrrivklp gfidvhvhlr epgathkedf
1501 asgtaaalag gvtlvcampn tnpsivdret ftqfqelaka garcdyalyv gasddnwaqv
1561 nelashacgl kmylndtfgt lklsdmtswq rhlshwpkrs pivchaerqs taavimlahl
1621 ldrsvhichv arkeeiqlir sakekgvkvt cevcphhlfl stkdverlgh gmsevrpllc
1681 spedqealwe nidyidvfat dhaphtlaek rserpppgfp gvetilplll qavhegrltm
1741 edikrkfhrn pkiifnlpdq aqtyvevdld eewtitgnem ksksgwtpfe gtkvkgrvhr
1801 vvlrgevafv dgqvlvqpgf gqnvrpkqsp laseasqdll psdndandtf trlltsegpg
1861 ggvhgistkv hfvdganflr pnspsprirl dsasnttlre ylqrttnsnp vahslmgkhi
1921 lavdmfnkdh lndifnlaql lklrgtkdrp vdellpgkim asvfyevstr tqcsfaaaml
1981 rlggrvismd nitssvkkge sledsikvvs syadvvvlrh pspgavaraa tfsrkplina
2041 gdgvgehptq alldiftire efgtvnglti tmvgdlkngr tvhslarllt lynvnlqyva
2101 pnslqmpdev vqfvhqrgvk qlfardlknv lpdtdvlymt riqrerfdnv edyekccghl
2161 vltpehmmra kkrsivlhpl prlneisrei dsdpraayfr qaeygmyirm allamvvggr
2221 ntal
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