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Select item 70499601.

Activating transcription factor 4 (ATF4) promotes skeletal muscle atrophy by forming a heterodimer with the transcriptional regulator C/EBPβ

Scott M. Ebert, Steven A. Bullard, Nathan Basisty, George R. Marcotte, Zachary P. Skopec, Jason M. Dierdorff, Asma Al-Zougbi, Kristin C. Tomcheck, Austin D. DeLau, Jacob A. Rathmacher, Sue C. Bodine, Birgit Schilling, Christopher M. Adams

J Biol Chem. 2020 Feb 28; 295(9): 2787–2803. Published online 2020 Jan 17. doi: 10.1074/jbc.RA119.012095

PMCID:: PMC7049960

Article PDF–1.6M

Select item 66729372.

Effects of Alzheimer's Disease on Different Cortical Layers: The Role of Intrinsic Differences in Aβ Susceptibility

Rita R. Romito-DiGiacomo, Harry Menegay, Samantha A. Cicero, Karl Herrup

J Neurosci. 2007 Aug 8; 27(32): 8496–8504. doi: 10.1523/JNEUROSCI.1008-07.2007

PMCID:: PMC6672937

Article PDF–344K

Select item 66502443.

Acetylation of BMAL1 by TIP60 controls BRD4-P-TEFb recruitment to circadian promoters

Nikolai Petkau, Harun Budak, Xunlei Zhou, Henrik Oster, Gregor Eichele

eLife. 2019; 8: e43235. Published online 2019 Jul 11. doi: 10.7554/eLife.43235

PMCID:: PMC6650244

Article PDF–4.8M

Select item 66203414.

Time series modeling of cell cycle exit identifies Brd4 dependent regulation of cerebellar neurogenesis

Clara Penas, Marie E. Maloof, Vasileios Stathias, Jun Long, Sze Kiat Tan, Jose Mier, Yin Fang, Camilo Valdes, Jezabel Rodriguez-Blanco, Cheng-Ming Chiang, David J. Robbins, Daniel J. Liebl, Jae K. Lee, Mary E. Hatten, Jennifer Clarke, Nagi G. Ayad

Nat Commun. 2019; 10: 3028. Published online 2019 Jul 10. doi: 10.1038/s41467-019-10799-5

PMCID:: PMC6620341

Article PDF–4.2M

Select item 65592995.

miRNA-302e attenuates inflammation in infantile pneumonia though the RelA/BRD4/NF-κB signaling pathway

Shaoxia Li, Wenwen Cui, Qing Song, Yufei Zhou, Jingtao Li

Int J Mol Med. 2019 Jul; 44(1): 47–56. Published online 2019 May 10. doi: 10.3892/ijmm.2019.4194

PMCID:: PMC6559299

Article PDF–1.1M

Select item 64775346.

Improved Hematopoiesis in GS-Nitroxide (JP4-039)-treated Mouse Long-term Bone Marrow Cultures and Radioresistance of Derived Bone Marrow Stromal Cell Lines

ASHWIN SHINDE, MICHAEL W. EPPERLY, SHAONAN CAO, DOUGLAS HOLT, JULIE GOFF, DONNA SHIELDS, DARCY FRANICOLA, PETER WIPF, HONG WANG, JOEL S. GREENBERGER

In Vivo. Author manuscript; available in PMC 2019 Apr 23.

Published in final edited form as: In Vivo. 2014 Sep-Oct; 28(5): 699–708.

PMCID:: PMC6477534

Article PDF–868K

Select item 64695777.

BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange-like syndrome

Gabrielle Olley, Morad Ansari, Hemant Bengani, Graeme R Grimes, James Rhodes, Alex von Kriegsheim, Ana Blatnik, Fiona J. Stewart, Emma Wakeling, Nicola Carroll, Alison Ross, Soo-Mi Park, DDD study, Wendy A Bickmore, Madapura M Pradeepa, David R FitzPatrick

Nat Genet. Author manuscript; available in PMC 2019 Apr 17.

Published in final edited form as: Nat Genet. 2018 Mar; 50(3): 329–332. Published online 2018 Jan 29. doi: 10.1038/s41588-018-0042-y

Correction in:: Nat Genet. 2018 Feb 12

Correction in:: Nat Genet. 2019 Jun 3

PMCID:: PMC6469577

Article PDF–871K

Select item 52188668.

Monica Sanchez-Contreras, Fernando Cardozo-Pelaez

DNA Repair (Amst) Author manuscript; available in PMC 2018 Jan 1.

Published in final edited form as: DNA Repair (Amst). 2017 Jan; 49: 26–32. Published online 2016 Oct 15. doi: 10.1016/j.dnarep.2016.10.003

PMCID:: PMC5218866

Article PDF–895K

Select item 51338499.

The Bromodomain and Extra-Terminal Domain (BET) Family: Functional Anatomy of BET Paralogous Proteins

Yasushi Taniguchi

Int J Mol Sci. 2016 Nov; 17(11): 1849. Published online 2016 Nov 7. doi: 10.3390/ijms17111849

PMCID:: PMC5133849

Article PDF–1.4M

Select item 477650710.

Structure of the Brd4 ET domain bound to a C-terminal motif from γ-retroviral integrases reveals a conserved mechanism of interaction

Brandon L. Crowe, Ross C. Larue, Chunhua Yuan, Sonja Hess, Mamuka Kvaratskhelia, Mark P. Foster

Proc Natl Acad Sci U S A. 2016 Feb 23; 113(8): 2086–2091. Published online 2016 Feb 8. doi: 10.1073/pnas.1516813113

PMCID:: PMC4776507

Article PDF–1.3M

Select item 437220211.

Revisiting the Identification of Canonical Splice Isoforms through Integration of Functional Genomics and Proteomics Evidence

Hong-Dong Li, Rajasree Menon, Gilbert S. Omenn, Yuanfang Guan

Proteomics. Author manuscript; available in PMC 2015 Dec 1.

Published in final edited form as: Proteomics. 2014 Dec; 14(0): 2709–2718. Published online 2014 Nov 17. doi: 10.1002/pmic.201400170

PMCID:: PMC4372202

Article PDF–503K

Select item 407488612.

Differences in Irradiated Lung Gene Transcription Between Fibrosis-Prone C57BL/6NHsd and Fibrosis-Resistant C3H/HeNHsd Mice

Ronny Kalash, Hebist Berhane, Jeremiah Au, Byung Han Rhieu, Michael W. Epperly, Julie Goff, Tracy Dixon, Hong Wang, Xichen Zhang, Darcy Franicola, Ashwin Shinde, Joel S. Greenberger

In Vivo. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: In Vivo. 2014 Mar-Apr; 28(2): 147–171.

PMCID:: PMC4074886

Article PDF–6.0M

Select item 279477013.

Structures of the Dual Bromodomains of the P-TEFb-activating Protein Brd4 at Atomic Resolution

Friederike Vollmuth, Wulf Blankenfeldt, Matthias Geyer

J Biol Chem. 2009 Dec 25; 284(52): 36547–36556. Published online 2009 Oct 13. doi: 10.1074/jbc.M109.033712

PMCID:: PMC2794770

Article PDF–4.1M

Select item 271042514.

Differences in gene expression profiles from asbestos-treated SPARC-null and wild type mouse lungs

Mark A. Pershouse, Aubrey M. Smartt, Corbin Schwanke, Elizabeth A. Putnam

Genomics. Author manuscript; available in PMC 2010 Aug 1.

Published in final edited form as: Genomics. 2009 Aug; 94(2): 101–109. Published online 2009 May 13. doi: 10.1016/j.ygeno.2009.04.009

PMCID:: PMC2710425

Article PDF–363K

Select item 237329015.

Zebrafish brd2a and brd2b are paralogous members of the bromodomain-ET (BET) family of transcriptional coregulators that show structural and expression divergence

Angela J DiBenedetto, Jake B Guinto, Timothy D Ebert, Katharine J Bee, Michael M Schmidt, Todd R Jackman

BMC Dev Biol. 2008; 8: 39. Published online 2008 Apr 10. doi: 10.1186/1471-213X-8-39

PMCID:: PMC2373290

Article PDF–829K

Select item 40371216.

Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia

Piero Carninci, Kazunori Waki, Toshiyuki Shiraki, Hideaki Konno, Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Takahiro Arakawa, Yoshiyuki Ishii, Daisuke Sasaki, Hidemasa Bono, Shinji Kondo, Yuichi Sugahara, Rintaro Saito, Naoki Osato, Shiro Fukuda, Kenjiro Sato, Akira Watahiki, Tomoko Hirozane-Kishikawa, Mari Nakamura, Yuko Shibata, Ayako Yasunishi, Noriko Kikuchi, Atsushi Yoshiki, Moriaki Kusakabe, Stefano Gustincich, Kirk Beisel, William Pavan, Vassilis Aidinis, Akira Nakagawara, William A. Held, Hiroo Iwata, Tomohiro Kono, Hiromitsu Nakauchi, Paul Lyons, Christine Wells, David A. Hume, Michela Fagiolini, Takao K. Hensch, Michelle Brinkmeier, Sally Camper, Junji Hirota, Peter Mombaerts, Masami Muramatsu, Yasushi Okazaki, Jun Kawai, Yoshihide Hayashizaki

Genome Res. 2003 Jun; 13(6b): 1273–1289. doi: 10.1101/gr.1119703

PMCID:: PMC403712

Article PDF–770K

Select item 31099217.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Article PDF–3.4M

Select item 31098018.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Article PDF–1.4M

Select item 13924119.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Article PDF–118K

Select item 13562120.

A Mammalian Bromodomain Protein, Brd4, Interacts with Replication Factor C and Inhibits Progression to S Phase

Tetsuo Maruyama, Andrea Farina, Anup Dey, JaeHun Cheong, Vladimir P. Bermudez, Tomohiko Tamura, Selvaggia Sciortino, Jon Shuman, Jerard Hurwitz, Keiko Ozato

Mol Cell Biol. 2002 Sep; 22(18): 6509–6520. doi: 10.1128/MCB.22.18.6509-6520.2002

PMCID:: PMC135621

Article PDF–701K

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