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    CCT6P3 chaperonin containing TCP1 subunit 6 pseudogene 3 [ Homo sapiens (human) ]

    Gene ID: 643180, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CCT6P3provided by HGNC
    Official Full Name
    chaperonin containing TCP1 subunit 6 pseudogene 3provided by HGNC
    Primary source
    HGNC:HGNC:35137
    See related
    Ensembl:ENSG00000290860 AllianceGenome:HGNC:35137
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CCT6-3P
    Expression
    Ubiquitous expression in testis (RPKM 5.5), prostate (RPKM 4.9) and 25 other tissues See more
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    Genomic context

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    Location:
    7q11.21
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (65038354..65074713)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (66244538..66280907)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (64498732..64535091)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375330 Neighboring gene RNA, U6 small nuclear 1229, pseudogene Neighboring gene uncharacterized LOC105375329 Neighboring gene MPRA-validated peak6535 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18198 Neighboring gene vitamin K epoxide reductase complex subunit 1 like 1 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:64503075-64503587 Neighboring gene MPRA-validated peak6536 silencer Neighboring gene uncharacterized LOC124901663 Neighboring gene small nucleolar RNA, H/ACA box 22C Neighboring gene small nucleolar RNA, H/ACA box 15B-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:64540973-64541867 Neighboring gene general transcription factor IIi pseudogene 14 Neighboring gene uncharacterized LOC124901662

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. Mukherjee K, et al. BMC Evol Biol, 2010 Mar 1. PMID 20193073, Free PMC Article
    2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3

    Clone Names

    • DKFZp779B0634

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033416.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073210, BC071617
      Related
      ENST00000426828.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      65038354..65074713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      66244538..66280907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_005630.4: Suppressed sequence

      Description
      NG_005630.4: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

    2. NG_026586.1: Suppressed sequence

      Description
      NG_026586.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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    Chemical Information
    Molecular Biology Databases