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    KCNIP1-OT1 KCNIP1 overlapping transcript 1 [ Homo sapiens (human) ]

    Gene ID: 101928033, updated on 10-Oct-2023

    Summary

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    Official Symbol
    KCNIP1-OT1provided by HGNC
    Official Full Name
    KCNIP1 overlapping transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:40320
    See related
    Ensembl:ENSG00000253647 AllianceGenome:HGNC:40320
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CTD-2270F17.1
    Expression
    Broad expression in endometrium (RPKM 2.8), prostate (RPKM 2.7) and 14 other tissues See more
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    Genomic context

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    Location:
    5q35.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (170389493..170422844)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (170928328..170961675)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (169816497..169849848)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:169757700-169758899 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169759699-169760548 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169760549-169761396 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23610 Neighboring gene long intergenic non-protein coding RNA 1366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169788107-169788607 Neighboring gene potassium voltage-gated channel interacting protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169814486-169814986 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169814987-169815487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169817412-169817912 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169817913-169818413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169818666-169819166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169819167-169819667 Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23611 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16606 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169865238-169866195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169911974-169912474 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:169913290-169913456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169962091-169962591 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169979309-169979878 Neighboring gene MPRA-validated peak5573 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:170024020-170025219 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:170038765-170039501 Neighboring gene uncharacterized LOC124901132 Neighboring gene Sharpr-MPRA regulatory region 9502 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170052347-170052846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170054080-170054580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170054581-170055081 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170059758-170060339 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170063109-170063858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170065509-170066304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170066305-170067098 Neighboring gene KCNIP1 antisense RNA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109899.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC027306, AC134820
      Related
      ENST00000518387.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      170389493..170422844
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      170928328..170961675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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