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    FAM86JP family with sequence similarity 86 member J, pseudogene [ Homo sapiens (human) ]

    Gene ID: 100125556, updated on 10-Oct-2023

    Summary

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    Official Symbol
    FAM86JPprovided by HGNC
    Official Full Name
    family with sequence similarity 86 member J, pseudogeneprovided by HGNC
    Gene description
    family with sequence similarity 86, member A pseudogene
    Primary source
    HGNC:HGNC:44097
    See related
    Ensembl:ENSG00000291071 AllianceGenome:HGNC:44097
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 1.9), ovary (RPKM 1.5) and 25 other tissues See more
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    Genomic context

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    Location:
    3q21.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (125916601..125930024)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (128649020..128662444)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (125635444..125648867)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene long intergenic non-protein coding RNA 2614 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4 Neighboring gene NANOG hESC enhancer GRCh37_chr3:125609269-125610164 Neighboring gene uncharacterized LOC102723696 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14669 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14670 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:125635188-125635778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125650034-125650534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125650535-125651035 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125655344-125655844 Neighboring gene ALG1 like 1, pseudogene Neighboring gene FBRSL1 pseudogene 1 Neighboring gene rhophilin associated tail protein 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
    2. Mammalian APE1 controls miRNA processing and its interactome is linked to cancer RNA metabolism. Antoniali G, et al. Nat Commun, 2017 Oct 6. PMID 28986522, Free PMC Article
    3. Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. Fasci D, et al. Mol Cell Proteomics, 2018 Oct. PMID 30021884, Free PMC Article
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • family with sequence similarity 86, member A pseudogene

    Clone Names

    • FLJ10661, MGC44881

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024250.1 RNA Sequence

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (2) lacks an alternate segment resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      BC032772, BC041080, BM781991
      Related
      ENST00000467239.5

    2. NR_024251.1 RNA Sequence

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      BC041080, DA599453
      Related
      ENST00000485843.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      125916601..125930024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      128649020..128662444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q05BU3.1 GenPept UniProtKB/Swiss-Prot:Q05BU3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases