U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    FAM90A17 family with sequence similarity 90 member A17 [ Homo sapiens (human) ]

    Gene ID: 728746, updated on 8-Nov-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    FAM90A17provided by HGNC
    Official Full Name
    family with sequence similarity 90 member A17provided by HGNC
    Primary source
    HGNC:HGNC:32265
    See related
    Ensembl:ENSG00000285720 AllianceGenome:HGNC:32265
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM90A16P; FAM90A17P
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See FAM90A17 in Genome Data Viewer
    Location:
    8p23.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (7746034..7749044)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (11891986..11894996)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (7603556..7606566)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene family with sequence similarity 90 member A16 Neighboring gene family with sequence similarity 90 member A8 Neighboring gene family with sequence similarity 90 member A19 Neighboring gene family with sequence similarity 90 member A9

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. Bosch N, et al. Gene, 2008 Sep 1. PMID 18602769
    2. Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. Bosch N, et al. Hum Mol Genet, 2007 Nov 1. PMID 17684299
    3. DNA sequence and analysis of human chromosome 8. Nusbaum C, et al. Nature, 2006 Jan 19. PMID 16421571

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein FAM90A17
    Names
    Protein FAM90A17
    family with sequence similarity 90 member A17, pseudogene
    putative protein FAM90A16P/FAM90A17P

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397391.1 → NP_001384320.1  protein FAM90A17

      Status: INFERRED

      Source sequence(s)
      AC084121
      Consensus CDS
      CCDS94254.1
      UniProtKB/Swiss-Prot
      A6NEW6, P0DV73, P0DV74, Q658T7
      Related
      ENSP00000497508.1, ENST00000650426.1
      Conserved Domains (2) summary
      PHA03247
      Location:25 → 371
      PHA03247; large tegument protein UL36; Provisional
      pfam15288
      Location:41 → 76
      zf-CCHC_6; Zinc knuckle

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      7746034..7749044
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_018654717.1 Reference GRCh38.p14 PATCHES

      Range
      5327967..5330977
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      11891986..11894996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_011770.1: Suppressed sequence

      Description
      NG_011770.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DV74.1 GenPept UniProtKB/Swiss-Prot:P0DV74

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.