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    TTTY5 testis expressed transcript, Y-linked 5 [ Homo sapiens (human) ]

    Gene ID: 83863, updated on 24-Oct-2023

    Summary

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    Official Symbol
    TTTY5provided by HGNC
    Official Full Name
    testis expressed transcript, Y-linked 5provided by HGNC
    Primary source
    HGNC:HGNC:16482
    See related
    Ensembl:ENSG00000215560 MIM:400038; AllianceGenome:HGNC:16482
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TTY5; LINC00126; NCRNA00126
    Summary
    There is a single copy of this gene on chromosome Y at the center of the P3 palindrome. [provided by RefSeq, Jul 2008]
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    Genomic context

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    See TTTY5 in Genome Data Viewer
    Location:
    Yq11.223
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (22296798..22298876, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (23123071..23125149)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (24442945..24445023, complement)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein Y-linked family 2 member U, pseudogene Neighboring gene RNA binding motif protein Y-linked family 1 member K, pseudogene Neighboring gene testis specific protein Y-linked 22, pseudogene Neighboring gene RNA binding motif protein Y-linked family 2 member F, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men. Kuroda-Kawaguchi T, et al. Nat Genet, 2001 Nov. PMID 11687796
    2. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • long intergenic non-protein coding RNA 126
    • testis-specific transcript, Y-linked 5 (non-protein coding)
    • transcript Y 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001541.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF332236
      Related
      ENST00000400581.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      22296798..22298876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      23123071..23125149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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