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    gata4 GATA binding protein 4 [ Takifugu rubripes (torafugu) ]

    Gene ID: 101079239, updated on 8-Mar-2024

    Summary

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    Gene symbol
    gata4
    Gene description
    GATA binding protein 4
    See related
    Ensembl:ENSTRUG00000012112
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Orthologs
    human zebrafish all
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    Genomic context

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    See gata4 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 16 NC_042300.1 (8549881..8556095)
    101 previous assembly FUGU5 (GCF_000180615.1) 16 NC_018905.1 (6245439..6251618)

    Chromosome 16 - NC_042300.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 13Bb Neighboring gene histidine triad nucleotide-binding protein 3-like Neighboring gene nuclear receptor coactivator 7-like Neighboring gene farnesyl-diphosphate farnesyltransferase 1 Neighboring gene cathepsin Bb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor GATA-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042300.1 Reference fTakRub1.2 Primary Assembly

      Range
      8549881..8556095
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003971672.3 → XP_003971721.1  transcription factor GATA-4

      UniProtKB/TrEMBL
      H2U141
      Related
      ENSTRUP00000030652.1, ENSTRUT00000030769.3
      Conserved Domains (2) summary
      cd00202
      Location:185 → 235
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      pfam05349
      Location:1 → 174
      GATA-N; GATA-type transcription activator, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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