U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC592552 E3 ubiquitin-protein ligase TTC3 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 592552, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC592552
    Gene description
    E3 ubiquitin-protein ligase TTC3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC592552 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145594.1 (42546706..42603153, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003576996.1 (117597..140182, complement)

    NW_022145594.1Genomic Context describing neighboring genes Neighboring gene amyloid beta precursor like protein 1 Neighboring gene U5 spliceosomal RNA Neighboring gene uncharacterized LOC585630 Neighboring gene U3 small nucleolar ribonucleoprotein protein IMP3 Neighboring gene uncharacterized LOC115921135

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase TTC3
    Names
    midasin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145594.1 Reference Spur_5.0 Primary Assembly

      Range
      42546706..42603153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030978257.1 → XP_030834117.1  E3 ubiquitin-protein ligase TTC3 isoform X3

      UniProtKB/TrEMBL
      A0A7M7SVC2
      Conserved Domains (6) summary
      PLN03088
      Location:365 → 452
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      COG0457
      Location:582 → 831
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      COG1196
      Location:1651 → 1878
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00006
      Location:368 → 393
      TPR; TPR repeat [structural motif]
      cd16481
      Location:2335 → 2376
      RING-H2_TTC3; RING finger, H2 subclass, found in Tetratricopeptide repeat protein 3 (TTC3) and similar proteins
      pfam07767
      Location:581 → 681
      Nop53; Nop53 (60S ribosomal biogenesis)

    2. XM_030978255.1 → XP_030834115.1  E3 ubiquitin-protein ligase TTC3 isoform X1

      UniProtKB/TrEMBL
      A0A7M7NDV8
      Conserved Domains (6) summary
      PLN03088
      Location:365 → 452
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      COG0457
      Location:582 → 831
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      COG1196
      Location:1651 → 1878
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00006
      Location:368 → 393
      TPR; TPR repeat [structural motif]
      cd16481
      Location:2336 → 2377
      RING-H2_TTC3; RING finger, H2 subclass, found in Tetratricopeptide repeat protein 3 (TTC3) and similar proteins
      pfam07767
      Location:581 → 681
      Nop53; Nop53 (60S ribosomal biogenesis)

    3. XM_030978256.1 → XP_030834116.1  E3 ubiquitin-protein ligase TTC3 isoform X2

      UniProtKB/TrEMBL
      A0A7M7NF75
      Conserved Domains (6) summary
      PLN03088
      Location:365 → 452
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      COG0457
      Location:582 → 831
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      COG1196
      Location:1651 → 1878
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00006
      Location:368 → 393
      TPR; TPR repeat [structural motif]
      cd16481
      Location:2336 → 2377
      RING-H2_TTC3; RING finger, H2 subclass, found in Tetratricopeptide repeat protein 3 (TTC3) and similar proteins
      pfam07767
      Location:581 → 681
      Nop53; Nop53 (60S ribosomal biogenesis)

    4. XM_030978258.1 → XP_030834118.1  E3 ubiquitin-protein ligase TTC3 isoform X4

      UniProtKB/TrEMBL
      A0A7M7NB59
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.