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    Crisp4 cysteine-rich secretory protein 4 [ Mus musculus (house mouse) ]

    Gene ID: 78081, updated on 12-May-2024

    Summary

    Official Symbol
    Crisp4provided by MGI
    Official Full Name
    cysteine-rich secretory protein 4provided by MGI
    Primary source
    MGI:MGI:1925331
    See related
    Ensembl:ENSMUSG00000025774 AllianceGenome:MGI:1925331
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9230112K08Rik
    Summary
    Enables calcium channel regulator activity. Acts upstream of or within binding activity of sperm to zona pellucida and regulation of acrosome reaction. Predicted to be active in extracellular space. Orthologous to human CRISP1 (cysteine rich secretory protein 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward genital fat pad adult (RPKM 22.0) See more
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    Genomic context

    Location:
    1 A3; 1 5.65 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (18185113..18216126, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (18114889..18145902, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene high mobility group box transcription factor 1 pseudogene Neighboring gene NLR family, pyrin domain containing 4F pseudogene Neighboring gene centromere protein E pseudogene Neighboring gene STARR-seq mESC enhancer starr_00369 Neighboring gene STARR-seq mESC enhancer starr_00370 Neighboring gene STARR-seq mESC enhancer starr_00371 Neighboring gene defensin beta 44, pseudogene Neighboring gene defensin beta 18

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General protein information

    Preferred Names
    cysteine-rich secretory protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347047.1NP_001333976.1  cysteine-rich secretory protein 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC161367
      Consensus CDS
      CCDS83531.1
      UniProtKB/TrEMBL
      E9PVG4, Q9D259
      Related
      ENSMUSP00000111001.2, ENSMUST00000115344.2
    2. NM_001347048.1NP_001333977.1  cysteine-rich secretory protein 4 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC161367, AK020340
      Consensus CDS
      CCDS83530.1
      UniProtKB/TrEMBL
      G5E862, Q9D259
      Related
      ENSMUSP00000026876.7, ENSMUST00000026876.13

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      18185113..18216126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006495591.4XP_006495654.1  cysteine-rich secretory protein 4 isoform X2

      UniProtKB/TrEMBL
      Q9D259
      Conserved Domains (2) summary
      pfam08562
      Location:157211
      Crisp
      cl00133
      Location:28139
      CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family
    2. XM_006495589.2XP_006495652.1  cysteine-rich secretory protein 4 isoform X1

      UniProtKB/TrEMBL
      Q9D259
      Conserved Domains (2) summary
      cd05383
      Location:46184
      CAP_CRISP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of cysteine-rich secretory proteins
      pfam08562
      Location:202256
      Crisp

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_030033.1: Suppressed sequence

      Description
      NM_030033.1: This RefSeq has been removed because it is a partial transcript.