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    FOXP1-AS1 FOXP1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 104502416, updated on 10-Oct-2023

    Summary

    Official Symbol
    FOXP1-AS1provided by HGNC
    Official Full Name
    FOXP1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:41942
    See related
    Ensembl:ENSG00000244203 AllianceGenome:HGNC:41942
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.1) See more
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    Genomic context

    See FOXP1-AS1 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (71289758..71305854)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (71326201..71342313)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (71338909..71355005)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:70882268-70882846 Neighboring gene RNA, U6 small nuclear 281, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:70903859-70904359 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:70902705-70903904 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:70926235-70926734 Neighboring gene OCT4 hESC enhancer GRCh37_chr3:70976354-70976889 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:70998543-70998739 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:71012492-71013094 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:71025197-71026396 Neighboring gene VISTA enhancer hs864 Neighboring gene forkhead box P1 Neighboring gene VISTA enhancer hs965 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:71114251-71114751 Neighboring gene uncharacterized LOC124906247 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:71128185-71128767 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20059 Neighboring gene VISTA enhancer hs1092 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:71178876-71179618 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:71193639-71194138 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:71205831-71206536 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:71214878-71215027 Neighboring gene NANOG hESC enhancer GRCh37_chr3:71259322-71259867 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:71275618-71276118 Neighboring gene VISTA enhancer hs630 Neighboring gene VISTA enhancer hs187 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:71354949-71355604 Neighboring gene uncharacterized LOC124906248 Neighboring gene Sharpr-MPRA regulatory region 6361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20060 Neighboring gene VISTA enhancer hs1116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:71463501-71464005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20061 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20062 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20063 Neighboring gene Sharpr-MPRA regulatory region 10822 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:71546600-71547538 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:71552767-71553966 Neighboring gene Sharpr-MPRA regulatory region 15380 Neighboring gene VISTA enhancer hs1149 Neighboring gene microRNA 1284

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126463.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC040624, DB022002
      Related
      ENST00000465742.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      71289758..71305854
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      71326201..71342313
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)