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    LINC01411 long intergenic non-protein coding RNA 1411 [ Homo sapiens (human) ]

    Gene ID: 101928176, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01411provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1411provided by HGNC
    Primary source
    HGNC:HGNC:50703
    See related
    Ensembl:ENSG00000249306 AllianceGenome:HGNC:50703
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    5q35.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (174336354..174527139)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (174877309..175068065)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (173763357..173954142)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724551 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173517875-173518376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173518377-173518876 Neighboring gene neuronal vesicle trafficking associated 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:173571770-173572270 Neighboring gene MPRA-validated peak5582 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173586113-173586614 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:173630390-173630890 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:173631827-173632589 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:173632590-173633351 Neighboring gene uncharacterized LOC124901139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23674 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173734378-173734878 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16642 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23675 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173754289-173754790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173754791-173755290 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:173755250-173756449 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:173762765-173763964 Neighboring gene cysteine rich transmembrane module containing 1 pseudogene Neighboring gene uncharacterized LOC105377739 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:173958925-173960124 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 71 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:173999018-174000217 Neighboring gene SUMO2 pseudogene 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174035513-174036138 Neighboring gene uncharacterized LOC105377740

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of prostate cancer LncRNAs by RNA-Seq. Hu CC, et al. Asian Pac J Cancer Prev, 2014. PMID 25422238
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • RP11-267A15.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125806.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108104, AC108112, BG330133, BM051440, BU620825
      Related
      ENST00000510234.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      174336354..174527139
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      174877309..175068065
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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