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    LINC01643 long intergenic non-protein coding RNA 1643 [ Homo sapiens (human) ]

    Gene ID: 105373010, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01643provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1643provided by HGNC
    Primary source
    HGNC:HGNC:52430
    See related
    Ensembl:ENSG00000236052 AllianceGenome:HGNC:52430
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LL22NC03-86D4.1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    22q12.3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (34017432..34218796)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (34474768..34676540)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene LARGE xylosyl- and glucuronyltransferase 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34134097-34134616 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34134617-34135136 Neighboring gene LARGE antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:34175765-34176266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:34178675-34179175 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13646 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:34231147-34231704 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18886 Neighboring gene Sharpr-MPRA regulatory region 672 Neighboring gene Sharpr-MPRA regulatory region 8125 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:34245227-34245862 Neighboring gene H3K27ac hESC enhancers GRCh37_chr22:34249333-34249834 and GRCh37_chr22:34249835-34250334 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:34263445-34263944 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:34265034-34265534 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:34265535-34266035 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:34271643-34272142 Neighboring gene Sharpr-MPRA regulatory region 329 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:34294924-34295536 Neighboring gene Sharpr-MPRA regulatory region 1840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13649 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13650 Neighboring gene LARGE1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18888 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:34411551-34412114 Neighboring gene uncharacterized LL22NC03-13G6.2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:34556235-34556992 Neighboring gene NANOG hESC enhancer GRCh37_chr22:34590594-34591168 Neighboring gene uncharacterized LOC124905108 Neighboring gene uncharacterized LOC105373012

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183585.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000655455.1

    2. NR_183586.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000669488.1

    3. NR_183587.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000664028.1

    4. NR_183588.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000652942.1

    5. NR_183589.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000669802.1

    6. NR_183590.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000656434.1

    7. NR_183591.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000657115.1

    8. NR_183592.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000658055.1

    9. NR_183593.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z99704
      Related
      ENST00000670329.1

    10. NR_183594.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000671554.1

    11. NR_183595.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000664743.1

    12. NR_183596.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000658589.1

    13. NR_183597.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000661903.1

    14. NR_183598.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000667570.1

    15. NR_183599.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z69707, Z82250, Z99704
      Related
      ENST00000659067.1

    16. NR_183600.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000654009.1

    17. NR_183601.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704

    18. NR_183602.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704

    19. NR_183603.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704

    20. NR_183604.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000665392.1

    21. NR_183605.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68285, Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000658699.1

    22. NR_183606.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      Z68288, Z68323, Z69707, Z82250, Z99704
      Related
      ENST00000653369.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      34017432..34218796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      34474768..34676540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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