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    Tsbp1 testis expressed basic protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 407788, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Tsbp1provided by MGI
    Official Full Name
    testis expressed basic protein 1provided by MGI
    Primary source
    MGI:MGI:3039565
    See related
    Ensembl:ENSMUSG00000057246 AllianceGenome:MGI:3039565
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NG8; TSBP; Tesb; Tesbp
    Summary
    Is expressed in nervous system and sensory organ. Orthologous to human TSBP1 (testis expressed basic protein 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 119.4) See more
    Orthologs
    human all
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    Genomic context

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    See Tsbp1 in Genome Data Viewer
    Location:
    17 18.0 cM; 17 B1
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (34617749..34679708)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (34398767..34460734)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene butyrophilin-like 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:34535059-34535242 Neighboring gene STARR-positive B cell enhancer ABC_E4211 Neighboring gene non-histone chromosomal protein HMG-14-like Neighboring gene butyrophilin-like 4 Neighboring gene butyrophilin-like 5, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BTL-II: a polymorphic locus with homology to the butyrophilin gene family, located at the border of the major histocompatibility complex class II and class III regions in human and mouse. Stammers M, et al. Immunogenetics, 2000 Apr. PMID 10803852
    2. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed basic protein 1
    Names
    testis specific basic protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001177.2 → NP_001001177.2  testis-expressed basic protein 1 isoform 1

      See identical proteins and their annotated locations for NP_001001177.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK077077, BY454825, CR974457, CT009767
      Consensus CDS
      CCDS37586.1
      UniProtKB/TrEMBL
      A2CG24, Q8BHP1
      Related
      ENSMUSP00000077685.6, ENSMUST00000078615.12

    2. NM_001163855.1 → NP_001157327.1  testis-expressed basic protein 1 isoform 2

      See identical proteins and their annotated locations for NP_001157327.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and in the central and 3' coding regions, compared to variant 1. The resulting isoform (2) has a distinct C-terminus and is shorter than isoform 1.
      Source sequence(s)
      BC051142, BY454825
      Consensus CDS
      CCDS50076.1
      UniProtKB/TrEMBL
      Q80XD0
      Related
      ENSMUSP00000109812.2, ENSMUST00000114175.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      34617749..34679708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011246526.4 → XP_011244828.1  testis-expressed basic protein 1 isoform X31

      See identical proteins and their annotated locations for XP_011244828.1

    2. XM_017317556.3 → XP_017173045.1  testis-expressed basic protein 1 isoform X5

    3. XM_017317553.3 → XP_017173042.1  testis-expressed basic protein 1 isoform X1

    4. XM_006524551.5 → XP_006524614.1  testis-expressed basic protein 1 isoform X4

      See identical proteins and their annotated locations for XP_006524614.1

    5. XM_006524550.5 → XP_006524613.1  testis-expressed basic protein 1 isoform X3

      See identical proteins and their annotated locations for XP_006524613.1

    6. XM_006524554.5 → XP_006524617.1  testis-expressed basic protein 1 isoform X7

      See identical proteins and their annotated locations for XP_006524617.1

    7. XM_006524556.5 → XP_006524619.1  testis-expressed basic protein 1 isoform X9

      See identical proteins and their annotated locations for XP_006524619.1

      UniProtKB/TrEMBL
      Q8BHP1

    8. XM_006524558.5 → XP_006524621.1  testis-expressed basic protein 1 isoform X12

      See identical proteins and their annotated locations for XP_006524621.1

      UniProtKB/TrEMBL
      Q8BHP1

    9. XM_006524555.5 → XP_006524618.1  testis-expressed basic protein 1 isoform X8

      See identical proteins and their annotated locations for XP_006524618.1

      UniProtKB/TrEMBL
      Q8BHP1

    10. XM_017317557.3 → XP_017173046.1  testis-expressed basic protein 1 isoform X10

      UniProtKB/TrEMBL
      Q8BHP1

    11. XM_017317558.3 → XP_017173047.1  testis-expressed basic protein 1 isoform X14

      UniProtKB/TrEMBL
      Q8BHP1

    12. XM_006524564.5 → XP_006524627.1  testis-expressed basic protein 1 isoform X18

      See identical proteins and their annotated locations for XP_006524627.1

      UniProtKB/TrEMBL
      Q8BHP1

    13. XM_006524567.5 → XP_006524630.1  testis-expressed basic protein 1 isoform X21

      See identical proteins and their annotated locations for XP_006524630.1

      UniProtKB/TrEMBL
      Q8BHP1

    14. XM_006524569.5 → XP_006524632.1  testis-expressed basic protein 1 isoform X23

      See identical proteins and their annotated locations for XP_006524632.1

      UniProtKB/TrEMBL
      Q8BHP1

    15. XM_006524553.5 → XP_006524616.1  testis-expressed basic protein 1 isoform X6

      See identical proteins and their annotated locations for XP_006524616.1

      UniProtKB/TrEMBL
      Q8BHP1

    16. XM_036160675.1 → XP_036016568.1  testis-expressed basic protein 1 isoform X1

    17. XM_036160676.1 → XP_036016569.1  testis-expressed basic protein 1 isoform X1

    18. XM_006524559.5 → XP_006524622.1  testis-expressed basic protein 1 isoform X13

      See identical proteins and their annotated locations for XP_006524622.1

      UniProtKB/TrEMBL
      Q8BHP1

    19. XM_006524563.5 → XP_006524626.1  testis-expressed basic protein 1 isoform X17

      See identical proteins and their annotated locations for XP_006524626.1

      UniProtKB/TrEMBL
      Q8BHP1

    20. XM_006524561.5 → XP_006524624.1  testis-expressed basic protein 1 isoform X15

      See identical proteins and their annotated locations for XP_006524624.1

      UniProtKB/TrEMBL
      Q8BHP1

    21. XM_006524562.5 → XP_006524625.1  testis-expressed basic protein 1 isoform X16

      See identical proteins and their annotated locations for XP_006524625.1

      UniProtKB/TrEMBL
      Q8BHP1

    22. XM_006524565.5 → XP_006524628.1  testis-expressed basic protein 1 isoform X19

      See identical proteins and their annotated locations for XP_006524628.1

      UniProtKB/TrEMBL
      Q8BHP1

    23. XM_006524568.5 → XP_006524631.1  testis-expressed basic protein 1 isoform X22

      See identical proteins and their annotated locations for XP_006524631.1

      UniProtKB/TrEMBL
      Q8BHP1

    24. XM_006524566.5 → XP_006524629.1  testis-expressed basic protein 1 isoform X20

      See identical proteins and their annotated locations for XP_006524629.1

      UniProtKB/TrEMBL
      Q8BHP1

    25. XM_006524547.5 → XP_006524610.1  testis-expressed basic protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006524610.1

    26. XM_036160677.1 → XP_036016570.1  testis-expressed basic protein 1 isoform X11

      UniProtKB/TrEMBL
      Q8BHP1

    27. XM_006524548.5 → XP_006524611.1  testis-expressed basic protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006524611.1

    28. XM_006524549.5 → XP_006524612.1  testis-expressed basic protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006524612.1

    29. XM_017317560.3 → XP_017173049.1  testis-expressed basic protein 1 isoform X25

    30. XM_017317561.3 → XP_017173050.1  testis-expressed basic protein 1 isoform X26

    31. XM_017317559.3 → XP_017173048.1  testis-expressed basic protein 1 isoform X24

      UniProtKB/TrEMBL
      Q8BHP1

    32. XM_017317562.3 → XP_017173051.1  testis-expressed basic protein 1 isoform X28

      UniProtKB/TrEMBL
      Q8BHP1

    33. XM_006524574.4 → XP_006524637.1  testis-expressed basic protein 1 isoform X27

      See identical proteins and their annotated locations for XP_006524637.1

      UniProtKB/TrEMBL
      Q3V0M8, Q8BHP1

    34. XM_017317555.2 → XP_017173044.1  testis-expressed basic protein 1 isoform X1

    35. XM_030249888.2 → XP_030105748.1  testis-expressed basic protein 1 isoform X2

    36. XM_030249889.1 → XP_030105749.1  testis-expressed basic protein 1 isoform X2

    37. XM_017317563.1 → XP_017173052.1  testis-expressed basic protein 1 isoform X29

    38. XM_006524577.3 → XP_006524640.1  testis-expressed basic protein 1 isoform X30

      See identical proteins and their annotated locations for XP_006524640.1

    RNA

    1. XR_876520.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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