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    SMIM28 small integral membrane protein 28 [ Homo sapiens (human) ]

    Gene ID: 110806279, updated on 15-Mar-2024

    Summary

    Official Symbol
    SMIM28provided by HGNC
    Official Full Name
    small integral membrane protein 28provided by HGNC
    Primary source
    HGNC:HGNC:53434
    See related
    Ensembl:ENSG00000262543 AllianceGenome:HGNC:53434
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    Location:
    6q24.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (138377905..138383486)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (139566388..139571971)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (138699042..138704623)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17593 Neighboring gene p53 apoptosis effector related to PMP22 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:138482885-138483855 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90516 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90526 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:138504387-138504888 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:138504889-138505388 Neighboring gene ARFGEF family member 3 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90581 Neighboring gene prostate and breast cancer overexpressed 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:138608085-138608584 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:138650317-138651290 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:138651291-138652264 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:138652315-138653064 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:138653065-138653812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:138655517-138656120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:138656121-138656722 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:138698741-138699245 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:138724054-138724574 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17595 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:138725096-138725616 Neighboring gene MARCKS like 1 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:138751321-138751822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:138751823-138752322 Neighboring gene heme binding protein 2 Neighboring gene microRNA 3145 Neighboring gene NHS like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General protein information

    Preferred Names
    small integral membrane protein 28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368163.3NP_001355092.1  small integral membrane protein 28

      Status: INFERRED

      Source sequence(s)
      AL031003
      Consensus CDS
      CCDS94012.1
      UniProtKB/Swiss-Prot
      A0A1B0GU29
      Related
      ENSP00000489939.1, ENST00000573100.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      138377905..138383486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      139566388..139571971
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)