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    Trrap transformation/transcription domain-associated protein [ Mus musculus (house mouse) ]

    Gene ID: 100683, updated on 9-May-2024

    Summary

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    Official Symbol
    Trrapprovided by MGI
    Official Full Name
    transformation/transcription domain-associated proteinprovided by MGI
    Primary source
    MGI:MGI:2153272
    See related
    Ensembl:ENSMUSG00000045482 AllianceGenome:MGI:2153272
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Enables transcription coactivator activity. Acts upstream of or within regulation of transcription, DNA-templated. Part of transcription regulator complex. Is expressed in several structures, including cranial ganglion; submandibular gland primordium; testis; tooth; and vibrissa. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 75. Orthologous to human TRRAP (transformation/transcription domain associated protein). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in ovary adult (RPKM 24.1), thymus adult (RPKM 17.5) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Trrap in Genome Data Viewer
    Location:
    5 G2; 5 84.77 cM
    Exon count:
    75
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (144704547..144796588)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (144767737..144859778)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 130 Neighboring gene STARR-seq mESC enhancer starr_14819 Neighboring gene predicted gene, 38739 Neighboring gene predicted gene, 23995 Neighboring gene SMAD specific E3 ubiquitin protein ligase 1 Neighboring gene microRNA 7039 Neighboring gene predicted gene, 33821

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Loss of histone acetyltransferase cofactor transformation/transcription domain-associated protein impairs liver regeneration after toxic injury. Shukla V, et al. Hepatology, 2011 Mar. PMID 21319192
    2. Histone acetyltransferase cofactor Trrap is essential for maintaining the hematopoietic stem/progenitor cell pool. Loizou JI, et al. J Immunol, 2009 Nov 15. PMID 19880447
    3. Genome-wide analysis of gene expression regulated by the HAT cofactor Trrap in conditional knockout cells. Herceg Z, et al. Nucleic Acids Res, 2003 Dec 1. PMID 14627834, Free PMC Article
    4. HAT cofactor TRRAP modulates microtubule dynamics via SP1 signaling to prevent neurodegeneration. Tapias A, et al. Elife, 2021 Feb 17. PMID 33594975, Free PMC Article
    5. Tissue-specific inactivation of HAT cofactor TRRAP reveals its essential role in B cells. Leduc C, et al. Cell Cycle, 2014. PMID 24675885, Free PMC Article

    See all (53) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TRRAP deficiency impairs B-cell development but does not directly affect class switch recombination (CSR. Instead, cells induced to proliferate undergo apoptosis. Our findings demonstrate a central and general role of TRRAP in cell proliferation.
      Title: Tissue-specific inactivation of HAT cofactor TRRAP reveals its essential role in B cells.
    2. this study has identified a critical role for Trrap in the mechanism that maintains hematopoietic stem cells and hematopoietic system, and underscores the importance of Trrap and histone modifications in tissue homeostasis.
      Title: Histone acetyltransferase cofactor Trrap is essential for maintaining the hematopoietic stem/progenitor cell pool.
    3. Fe65 and its interaction with APP play an important role in the response to DNA damage by assisting the recruitment
      Title: Fe65 is required for Tip60-directed histone H4 acetylation at DNA strand breaks.
    4. expression profiles of Trrap-responsive genes, using cDNA microarray in mitotic cells
      Title: Genome-wide analysis of gene expression regulated by the HAT cofactor Trrap in conditional knockout cells.
    5. HAT cofactor Trrap and Tip60 HAT bind to the chromatin surrounding sites of DNA double-strand breaks (DSBs). Cells may use the same basic mechanism involving HAT complexes to regulate distinct cellular processes, such as transcription and DNA repair.
      Title: Histone acetylation by Trrap-Tip60 modulates loading of repair proteins and repair of DNA double-strand breaks.
    6. Data show that the loss of Trrap leads to chromosome missegregation, mitotic exit failure and compromised mitotic checkpoints, which are caused by defective Trrap-mediated transcription of the mitotic checkpoint proteins Mad1 and Mad2.
      Title: HAT cofactor Trrap regulates the mitotic checkpoint by modulation of Mad1 and Mad2 expression.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (3)  1 citation

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription coactivator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription coregulator activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mitotic cell cycle checkpoint signaling IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in positive regulation of double-strand break repair via homologous recombination ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of DNA repair NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of RNA splicing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of apoptotic process NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of cell cycle ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of double-strand break repair NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of NuA4 histone acetyltransferase complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of SAGA complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of SAGA complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of SAGA complex NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    part_of Swr1 complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of histone acetyltransferase complex TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of nucleosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of transcription factor TFTC complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of transcription factor TFTC complex NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    part_of transcription regulator complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transformation/transcription domain-associated protein
    Names
    tra1 homolog
    transactivation/transformation-domain associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081362.2 → NP_001074831.1  transformation/transcription domain-associated protein

      Status: VALIDATED

      Source sequence(s)
      AC113295, AC131728
      Consensus CDS
      CCDS39379.1
      UniProtKB/TrEMBL
      E9PZA7, E9QLK7
      Related
      ENSMUSP00000098035.4, ENSMUST00000100467.10
      Conserved Domains (3) summary
      COG5032
      Location:2526 → 3847
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3484 → 3771
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2842 → 3174
      FAT; FAT domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      144704547..144796588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504782.3 → XP_006504845.1  transformation/transcription domain-associated protein isoform X1

      See identical proteins and their annotated locations for XP_006504845.1

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3911
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3522 → 3835
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3211
      FAT; FAT domain

    2. XM_030254015.1 → XP_030109875.1  transformation/transcription domain-associated protein isoform X3

      UniProtKB/TrEMBL
      E9PWT1
      Conserved Domains (3) summary
      COG5032
      Location:2551 → 3910
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3521 → 3834
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2867 → 3210
      FAT; FAT domain

    3. XM_006504781.3 → XP_006504844.1  transformation/transcription domain-associated protein isoform X1

      See identical proteins and their annotated locations for XP_006504844.1

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3911
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3522 → 3835
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3211
      FAT; FAT domain

    4. XM_006504789.3 → XP_006504852.1  transformation/transcription domain-associated protein isoform X10

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3885
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3522 → 3809
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3211
      FAT; FAT domain

    5. XM_006504787.3 → XP_006504850.1  transformation/transcription domain-associated protein isoform X7

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3893
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3504 → 3817
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3211
      FAT; FAT domain

    6. XM_006504784.3 → XP_006504847.1  transformation/transcription domain-associated protein isoform X2

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3910
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3521 → 3834
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3211
      FAT; FAT domain

    7. XM_006504790.3 → XP_006504853.1  transformation/transcription domain-associated protein isoform X11

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (2) summary
      COG5032
      Location:2552 → 3884
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3521 → 3808
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein

    8. XM_030254018.1 → XP_030109878.1  transformation/transcription domain-associated protein isoform X8

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3892
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3503 → 3816
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3211
      FAT; FAT domain

    9. XM_006504793.3 → XP_006504856.1  transformation/transcription domain-associated protein isoform X15

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Related
      ENSMUSP00000148419.2, ENSMUST00000213013.2
      Conserved Domains (2) summary
      COG5032
      Location:2552 → 3866
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3503 → 3790
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein

    10. XM_006504786.3 → XP_006504849.1  transformation/transcription domain-associated protein isoform X4

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3900
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3511 → 3824
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3200
      FAT; FAT domain

    11. XM_017320576.2 → XP_017176065.1  transformation/transcription domain-associated protein isoform X13

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3874
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3511 → 3798
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3200
      FAT; FAT domain

    12. XM_017320575.2 → XP_017176064.1  transformation/transcription domain-associated protein isoform X5

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3899
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3510 → 3823
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3200
      FAT; FAT domain

    13. XM_036164690.1 → XP_036020583.1  transformation/transcription domain-associated protein isoform X12

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3881
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3492 → 3805
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2858 → 3200
      FAT; FAT domain

    14. XM_017320577.2 → XP_017176066.1  transformation/transcription domain-associated protein isoform X16

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3855
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3492 → 3779
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3200
      FAT; FAT domain

    15. XM_011240999.3 → XP_011239301.1  transformation/transcription domain-associated protein isoform X6

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2534 → 3893
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3504 → 3817
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2850 → 3193
      FAT; FAT domain

    16. XM_006504788.3 → XP_006504851.1  transformation/transcription domain-associated protein isoform X9

      UniProtKB/TrEMBL
      E9PZA7
      Conserved Domains (3) summary
      COG5032
      Location:2527 → 3886
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3497 → 3810
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2843 → 3186
      FAT; FAT domain

    17. XM_006504795.3 → XP_006504858.1  transformation/transcription domain-associated protein isoform X19

      UniProtKB/TrEMBL
      E9PZA7
      Conserved Domains (3) summary
      COG5032
      Location:2527 → 3830
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3467 → 3754
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2843 → 3175
      FAT; FAT domain

    18. XM_006504785.3 → XP_006504848.1  transformation/transcription domain-associated protein isoform X3

      UniProtKB/TrEMBL
      E9PWT1
      Conserved Domains (3) summary
      COG5032
      Location:2551 → 3910
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3521 → 3834
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2867 → 3210
      FAT; FAT domain

    19. XM_006504792.4 → XP_006504855.1  transformation/transcription domain-associated protein isoform X14

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Related
      ENSMUSP00000122021.2, ENSMUST00000132925.2
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3873
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3510 → 3797
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3200
      FAT; FAT domain

    20. XM_006504794.4 → XP_006504857.1  transformation/transcription domain-associated protein isoform X17

      UniProtKB/TrEMBL
      E9PZA7
      Conserved Domains (3) summary
      COG5032
      Location:2527 → 3848
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3485 → 3772
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2843 → 3175
      FAT; FAT domain

    21. XM_017320578.3 → XP_017176067.1  transformation/transcription domain-associated protein isoform X18

      UniProtKB/TrEMBL
      E9PZA7, E9QLK7
      Conserved Domains (3) summary
      COG5032
      Location:2526 → 3847
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3484 → 3771
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2842 → 3174
      FAT; FAT domain

    22. XM_006504783.4 → XP_006504846.1  transformation/transcription domain-associated protein isoform X1

      See identical proteins and their annotated locations for XP_006504846.1

      UniProtKB/TrEMBL
      A0A1D5RLL4
      Conserved Domains (3) summary
      COG5032
      Location:2552 → 3911
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3522 → 3835
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2868 → 3211
      FAT; FAT domain

    23. XM_030254016.1 → XP_030109876.1  transformation/transcription domain-associated protein isoform X3

      UniProtKB/TrEMBL
      E9PWT1
      Conserved Domains (3) summary
      COG5032
      Location:2551 → 3910
      TEL1; Phosphatidylinositol kinase or protein kinase, PI-3 family [Signal transduction mechanisms]
      cd05163
      Location:3521 → 3834
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:2867 → 3210
      FAT; FAT domain

    RNA

    1. XR_377190.4 RNA Sequence

    2. XR_377189.4 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_133901.2: Suppressed sequence

      Description
      NM_133901.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q80YV3.2 GenPept UniProtKB/Swiss-Prot:Q80YV3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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