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    CYCSP24 CYCS pseudogene 24 [ Homo sapiens (human) ]

    Gene ID: 360177, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CYCSP24provided by HGNC
    Official Full Name
    CYCS pseudogene 24provided by HGNC
    Primary source
    HGNC:HGNC:24398
    See related
    AllianceGenome:HGNC:24398
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HC3; HCP24; HCP31
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    Genomic context

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    Location:
    9q22.32
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (94037964..94038545)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (106205701..106206282)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (96800246..96800827)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96715091-96715655 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96715656-96716219 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96717631-96718162 Neighboring gene uncharacterized LOC124902216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96718163-96718693 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110021 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96730989-96731521 Neighboring gene BARX1 divergent transcript Neighboring gene BARX homeobox 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:96741809-96742308 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:96748340-96749539 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:96767229-96768428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28627 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20051 Neighboring gene protein tyrosine phosphatase domain containing 1 Neighboring gene Sharpr-MPRA regulatory region 768 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:96856496-96857248 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:96880956-96881652 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110048 Neighboring gene tripartite motif-containing protein 54-like Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110072 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110085 Neighboring gene PTPDC1-MIRLET7DHG intergenic CAGE-defined high expression enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20053 Neighboring gene miRlet-7a-1/let-7f-1/let-7d cluster host gene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20054 Neighboring gene microRNA let-7a-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. Evans MJ, et al. Proc Natl Acad Sci U S A, 1988 Dec. PMID 2849112, Free PMC Article
    2. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Zhang Z, et al. Gene, 2003 Jul 17. PMID 12909341

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • cytochrome c, somatic pseudogene 24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_002974.3 

      Range
      101..682
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      94037964..94038545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      106205701..106206282
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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