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    LOC642554 leucine rich repeat containing 59 pseudogene [ Homo sapiens (human) ]

    Gene ID: 642554, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC642554
    Gene description
    leucine rich repeat containing 59 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    6q12
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (63441218..63443913)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (64587157..64589852)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (64151123..64153818)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene putative UPF0607 protein ENSP00000383144 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17307 Neighboring gene lengsin, lens protein with glutamine synthetase domain Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:64057036-64058235 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24713 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24715 Neighboring gene DENN domain containing 1C pseudogene Neighboring gene Sharpr-MPRA regulatory region 2763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24716 Neighboring gene HNF1 motif-containing MPRA enhancer 15 Neighboring gene eukaryotic translation elongation factor 1 beta 2 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24717 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24718 Neighboring gene protein tyrosine phosphatase 4A1 Neighboring gene ribosomal protein L7a pseudogene 34

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021280.2 

      Range
      101..2796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      63441218..63443913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      64587157..64589852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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